PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G007500.1

Common Name

B456_007G007500, LOC105801743

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 325aa MW: 37215.3 Da PI: 8.8024

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G007500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.6	6.1e-40	107	248	1	131
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssas 83 aa k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qakp+i +l+++ + s++ +++e++++s+ Gorai.007G007500.1 107 AASKTDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLVQAKPEITKLMNNnnnsfgfaK-SPS--STSETEVVSGI 194 5889***********************************************************666665431.222..12223333333 PP TCP 84 nsssg......kaaksaakskksqksaasalnlakesrakarararertrekmr 131 + ++ k +s++++k+++++++s++ la++ r kar+ra+ rt+ek++ Gorai.007G007500.1 195 DKAAAidgnipKGTPSKKEKKERRQRKTSFRPLARDMRVKARERAKARTKEKNM 248 222225566667777777777777777789******************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-40	109	248	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.407	110	168	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.009	229	246	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MFPSNSNGNN NDPITYLDHS ILPLSFFHSP SSPNYNQCEL LQLDEYDYDV LWNQQQHFDD 60 DDDQFLHQTT LLTDNSVSET IVNLPDCRHN NTTTDIHQQP MPRKRPAASK TDRHSKINTA 120 NGPRDRRMRL SLDVAREFFG LQDMLGYDKA SRTVEWLLVQ AKPEITKLMN NNNNSFGFAK 180 SPSSTSETEV VSGIDKAAAI DGNIPKGTPS KKEKKERRQR KTSFRPLARD MRVKARERAK 240 ARTKEKNMSL RLNNETRDND PNRFSSSWSS TWTKQPGIQN HHNNNNTVFQ ADNINIHGDR 300 MIWSLNCLQN TGLINQELTG SILW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622938	0.0	JX622938.1 Gossypium hirsutum clone NBRI_GE69896 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488460.1	0.0	PREDICTED: transcription factor TCP18-like isoform X1
TrEMBL	A0A0D2T6X2	0.0	A0A0D2T6X2_GOSRA; Uncharacterized protein
STRING	Gorai.007G007500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7269	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	2e-30	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G007500.1
Entrez Gene	105801743

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]