PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G268800.1

Common Name

B456_006G268800, LOC105800805

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 298aa MW: 32514.9 Da PI: 6.6122

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G268800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.6	2.4e-37	28	87	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCds ntkfCyynny+lsq ryfCk+CrryWtkGG lrnvPvGgg+rk ++s Gorai.006G268800.1 28 HHQALQCPRCDSLNTKFCYYNNYNLSQLRYFCKSCRRYWTKGGVLRNVPVGGGCRKARHS 87 67999***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	28	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	30	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.885	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MQDTHSIGGG RILSGGGGVG YGRLRPQHHQ ALQCPRCDSL NTKFCYYNNY NLSQLRYFCK 60 SCRRYWTKGG VLRNVPVGGG CRKARHSKIK PSATITVAAA AVQPQLLQKQ HCNQLKENTH 120 SSSESSSLTA TNFNVPATNN NNNSGGSTAE AAPAVTSHSS LINLSDSKLY ENPNDLGFTE 180 MESFTSLITW SNNETVPFGF GNVFSEQGQW QQLQQQPKMV STGVEELTMG LLDPTVEIEL 240 ANLDNRSKGG DCGGFRPLDW EGGGDQGTTL LDLSNGDQTY WNQNQWTDQD PPTLYLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	16	GGRILSGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487596.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A0D2T516	0.0	A0A0D2T516_GOSRA; Uncharacterized protein
STRING	Gorai.006G268800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-40	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Gorai.006G268800.1
Entrez Gene	105800805

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]