PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G268400.1
Common NameB456_006G268400, LOC105800802
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28007.7 Da    PI: 8.8366
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G268400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Gorai.006G268400.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59
                        79***********************************************96 PP
2K-box951.2e-31801737100
               K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         +s + +++++++qe+ kLk+++e Lqr+qR+llGedL++L+ keL qLe+qLe slk+iRs+K + +l+q+++l ++ek l ++nk+Lr+k
  Gorai.006G268400.1  80 NSRSISETQNSYQEYLKLKARVEVLQRSQRNLLGEDLGPLDSKELDQLEHQLEASLKQIRSTKVQAMLDQLHDLHNREKLLVDANKSLRRK 170
                         44678899*********************************************************************************** PP

               K-box  98 lee 100
                         lee
  Gorai.006G268400.1 171 LEE 173
                         987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.165161IPR002100Transcription factor, MADS-box
CDDcd002651.52E-45279No hitNo description
SuperFamilySSF554551.44E-33278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-333859IPR002100Transcription factor, MADS-box
PfamPF014867.8E-2784171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.47787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS  60
PSMTKTLEKY QKCSYSTLDN SRSISETQNS YQEYLKLKAR VEVLQRSQRN LLGEDLGPLD  120
SKELDQLEHQ LEASLKQIRS TKVQAMLDQL HDLHNREKLL VDANKSLRRK LEELSTQVPQ  180
GLAWDNIGGP SIPPYNRLTA AQSEAFFHPP GANCSSQIGY SNDVVSDEMN GAVHSQNVNG  240
YFPGWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-288917119101Developmental protein SEPALLATA 3
4ox0_B2e-288917119101Developmental protein SEPALLATA 3
4ox0_C2e-288917119101Developmental protein SEPALLATA 3
4ox0_D2e-288917119101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.19121e-125flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO626336041e-125
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556430.0KC155643.1 Gossypium hirsutum MADS box protein MADS48 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487593.10.0PREDICTED: MADS-box protein CMB1-like
SwissprotQ7Y0401e-110EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A0D2SA710.0A0A0D2SA71_GOSRA; Uncharacterized protein
STRINGGorai.006G268400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]