PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G266900.1 | ||||||||
Common Name | B456_006G266900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 266aa MW: 31325.6 Da PI: 4.9681 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.3 | 1e-25 | 104 | 153 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e +s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWP+Rk+ sl Gorai.006G266900.1 104 KMLSREIISQYFYMPITKAAKELKVGLTLLKKRCRELGIRRWPYRKLMSL 153 78999******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.279 | 89 | 174 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.5E-21 | 106 | 153 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGSNCSFNGW SNEGCSSSFP QPLDSSLFYN SMVEDEFSVQ DMSFYDSAPL MNSFCLYADV 60 EQNPNLTQEN SFWNELGTLF EPENQKFLKR LMREKKTKNF NNAKMLSREI ISQYFYMPIT 120 KAAKELKVGL TLLKKRCREL GIRRWPYRKL MSLQTLTKNL QVLDREEREG SEGKLREAME 180 ALRKEREMLE EMPNMELDDR TKRLRQACFK ANYKKRKMMM MMVMEEEPSR LAAEAFGSNN 240 DGSRRNEEEE DDDEEIKYLL SDSFSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483163.1 | 1e-161 | PREDICTED: protein RKD2-like | ||||
TrEMBL | A0A0D2S2W4 | 0.0 | A0A0D2S2W4_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.006G266900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-47 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G266900.1 |
Publications ? help Back to Top | |||
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