PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G266900.1
Common NameB456_006G266900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 266aa    MW: 31325.6 Da    PI: 4.9681
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G266900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.31e-25104153352
              RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         k +s e +s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWP+Rk+ sl
  Gorai.006G266900.1 104 KMLSREIISQYFYMPITKAAKELKVGLTLLKKRCRELGIRRWPYRKLMSL 153
                         78999******************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.27989174IPR003035RWP-RK domain
PfamPF020422.5E-21106153IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGSNCSFNGW SNEGCSSSFP QPLDSSLFYN SMVEDEFSVQ DMSFYDSAPL MNSFCLYADV  60
EQNPNLTQEN SFWNELGTLF EPENQKFLKR LMREKKTKNF NNAKMLSREI ISQYFYMPIT  120
KAAKELKVGL TLLKKRCREL GIRRWPYRKL MSLQTLTKNL QVLDREEREG SEGKLREAME  180
ALRKEREMLE EMPNMELDDR TKRLRQACFK ANYKKRKMMM MMVMEEEPSR LAAEAFGSNN  240
DGSRRNEEEE DDDEEIKYLL SDSFSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483163.11e-161PREDICTED: protein RKD2-like
TrEMBLA0A0D2S2W40.0A0A0D2S2W4_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.006G266900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-47RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]