PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.006G263900.1 | ||||||||
Common Name | B456_006G263900, LOC105797998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 144aa MW: 15728.8 Da PI: 5.0201 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 164.6 | 1.3e-51 | 21 | 116 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqd++lPianv+rimk++lP nakisk+aket+qec+sefisfvt+e+s+kc++e+rkt+ngdd++walatlG++dy+ plk yl +yre Gorai.006G263900.1 21 KEQDQLLPIANVGRIMKQILPPNAKISKEAKETMQECASEFISFVTGETSEKCKKERRKTVNGDDICWALATLGLDDYAVPLKRYLLRYRE 111 79***************************************************************************************** PP NF-YB 93 legek 97 lege+ Gorai.006G263900.1 112 LEGEH 116 **997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.5E-47 | 14 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.54E-35 | 23 | 121 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-27 | 26 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.6E-15 | 54 | 72 | No hit | No description |
PRINTS | PR00615 | 5.6E-15 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 5.6E-15 | 92 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MAENAGTSGT TSNNGNSVGF KEQDQLLPIA NVGRIMKQIL PPNAKISKEA KETMQECASE 60 FISFVTGETS EKCKKERRKT VNGDDICWAL ATLGLDDYAV PLKRYLLRYR ELEGEHKPAA 120 NHDKVAIVDN CNVEDGDNMG PLI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-40 | 21 | 111 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-40 | 21 | 111 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012483313.1 | 1e-104 | PREDICTED: nuclear transcription factor Y subunit B-5-like | ||||
Swissprot | O82248 | 6e-54 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A0D2QHA5 | 1e-103 | A0A0D2QHA5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G263900.1 | 1e-103 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47810.1 | 1e-48 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.006G263900.1 |
Entrez Gene | 105797998 |
Publications ? help Back to Top | |||
---|---|---|---|
|