PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G260300.1 | ||||||||
Common Name | B456_006G260300, LOC105800723 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 30051.8 Da PI: 8.9511 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.4e-21 | 95 | 143 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++g Gorai.006G260300.1 95 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 143 9*******.**********94....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-23 | 94 | 152 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-37 | 94 | 157 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.052 | 94 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 95 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 95 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.56E-34 | 95 | 153 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MCGGAIISDF VAPKYDRQLT GDDLWSELDI FSDLLGFDNN GKSFVNHQFH NNNNNKKLIN 60 PKDNQLNKER SETIQKTSQV TKKVEKTQRT RKNFYRGIRQ RPWGKWAAEI RDPQKGVRVW 120 LGTYNTAEEA ARAYDEAAKR IRGDKAKLNF PQTPTKNQAA SPALTLLPPA KKRCIVPELT 180 QPSFQTDSPP YPMGLGYGRS EDYKPIEVVE SELELKEQIW SLESFLGLET NHETMTQLSG 240 NGGTDSLELW TLDDLVTQYK QRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-23 | 95 | 151 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.302 | 6e-65 | seedling |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY781119 | 0.0 | AY781119.1 Gossypium hirsutum ethylene-responsive element binding protein ERF6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012487470.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A0D2S2K7 | 0.0 | A0A0D2S2K7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G260300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 7e-49 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G260300.1 |
Entrez Gene | 105800723 |
Publications ? help Back to Top | |||
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