PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G229500.4

Common Name

B456_006G229500, LOC105800438

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 414aa MW: 44828.9 Da PI: 6.1379

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G229500.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	1e-09	216	274	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+k+++L++e ++L+ +l l+ ++ + +e+ Gorai.006G229500.4 216 KRAKRIWANRQSAARSKERKMRYIAELERKIQTLQTEATSLAAQLTLLQRDSSGMSAEN 274 9*********************************************9998888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-14	212	276	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	214	277	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.66E-10	216	266	No hit	No description
Pfam	PF00170	2.1E-8	216	273	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-9	216	267	No hit	No description
CDD	cd14703	1.55E-24	217	266	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MEKDKSPCLP PMSGRVPGFS SSGNAASTSN AISETGNFGQ TSDSNSFSHD ISKMPDNPPK 60 NLGHRRAHSE IITLPDDINF DGDLGVVGAA DGPSYSDETE DDMLSMYLDI DKFNSSSVTS 120 MFQVGKSLTT TAPNSGPSAA VSMGAGTATS GEENASVGVG SSEKPRIRHQ HSQSMDGSTS 180 IKPEMLLSGS DEVTPADSKK AMSAAKLAEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA 240 ELERKIQTLQ TEATSLAAQL TLLQRDSSGM SAENSELKLR LQTMEQQVYL QDSLNDALKE 300 EIQHLKVLTA QPMPNGGPMM NFASFGASQQ YIPNNHAMQA VLTAQQFQQL QIQLQKHQHQ 360 FPPHQLHQLQ QQLQLQQELQ QQAGEMRVRG SMPSPNRRDG PSSSDVSSTA SND*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MEKDKSPCLP PMSGRVPGFS SSGNAASTSN AISETGNFGQ TSDSNSFSHD ISKMPDNPPK  60
NLGHRRAHSE IITLPDDINF DGDLGVVGAA DGPSYSDETE DDMLSMYLDI DKFNSSSVTS  120
MFQVGKSLTT TAPNSGPSAA VSMGAGTATS GEENASVGVG SSEKPRIRHQ HSQSMDGSTS  180
IKPEMLLSGS DEVTPADSKK AMSAAKLAEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA  240
ELERKIQTLQ TEATSLAAQL TLLQRDSSGM SAENSELKLR LQTMEQQVYL QDSLNDALKE  300
EIQHLKVLTA QPMPNGGPMM NFASFGASQQ YIPNNHAMQA VLTAQQFQQL QIQLQKHQHQ  360
FPPHQLHQLQ QQLQLQQELQ QQAGEMRVRG SMPSPNRRDG PSSSDVSSTA SND*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487039.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_012487040.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-145	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0D2S115	0.0	A0A0D2S115_GOSRA; Uncharacterized protein
STRING	Gorai.006G229500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-122	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G229500.4
Entrez Gene	105800438

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]