PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G214400.1
Common NameB456_006G214400, LOC105800288
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 517aa    MW: 57594.7 Da    PI: 6.6833
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G214400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504.1e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Gorai.006G214400.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11545No hitNo description
CDDcd002026.62E-16654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.7E-14741IPR000679Zinc finger, GATA-type
PfamPF139191.1E-10280365IPR028020ASX homology domain
PfamPF165507.1E-9298363IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDN  60
RASRVKSISI NKNKEVKFLK RKPNHDTMVV APDYNQGFRK FVDDDTSNRS SSGSAISNSE  120
SCAQFGGADA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS PVEKLTKDLC SILHEQQSSY  180
FSGSSEEDLL LESQIPMVSF EFGHGSVLIR HPSSIAREEE SEASSLSVEN KQYSVNEAYS  240
HCSSFPTYND SKGFKISGHG IEKANTARQG MEHEQLRRDK VQHEKSLMLE SHNSPLCKID  300
LNDVLNFEEF MKHLTNEEQQ QLLQYLPPLD SSKFPDSLEN MFESPQFKEN LCYFQKLLEE  360
GVFKISVPGV KAEDCKTLKR LVLFNLTKSH WVEHCHVLKK CKSTIGGCAT ARGPNATALN  420
NLATMKRSRD SQCQNFPEAR NLNIPKRVIM KATCENKELV DNDGSCFSPG SLLTLPHDGS  480
SPLLDSLHYV DESSDQDLLL DVPSNGSFPL AELLHL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486772.10.0PREDICTED: GATA transcription factor 26-like isoform X3
SwissprotQ8W4H11e-149GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0D2S0C00.0A0A0D2S0C0_GOSRA; Uncharacterized protein
STRINGGorai.006G214400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-136GATA transcription factor 26
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]