PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G208200.1 | ||||||||
Common Name | B456_006G208200, LOC105800222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 338aa MW: 37835 Da PI: 5.7104 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.7e-19 | 123 | 173 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g Gorai.006G208200.1 123 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAVVYDNAAIKLRG 173 59********.**********72....45*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.90E-33 | 123 | 180 | No hit | No description |
PROSITE profile | PS51032 | 23.736 | 124 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 124 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-30 | 124 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-38 | 124 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 124 | 181 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.9E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MDHSPVHSIK YTEHRYQTKL LSPLLDVSLV KQPEMKRRIV RISVTDADAT DSSGDEDDDY 60 EEHASQLRCR NRVKKYVNEI TIESTLCPVQ NGRVSRSKTS LSKSSRKRPA MKVKATMKAP 120 ADKKFRGVRQ RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AVVYDNAAIK LRGPDALTNF 180 SNPKLQDKNS QKPLSSSDYH SGEESLNTNL CSPTSVLRCL SLSADEGDSQ SVKESRELRS 240 EPGAVVDDSC FTSGEKFSEF SDQSSLFPSD IFSSVPELFD DNTSFHDCFL KDDFSNGFLS 300 SGGDFEFGFG GFSRWQRVDD HFQDIGDLFG SDPLVAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 123 | 180 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486666.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A0D2S018 | 0.0 | A0A0D2S018_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G208200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-53 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G208200.1 |
Entrez Gene | 105800222 |
Publications ? help Back to Top | |||
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