PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G207800.1
Common NameB456_006G207800, LOC105800217
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 302aa    MW: 33516.9 Da    PI: 8.9604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G207800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19110160256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr++  +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Gorai.006G207800.1 110 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDTAETAAYAYDRAAYKLRGE 160
                         59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-22109169No hitNo description
SuperFamilySSF541711.11E-22110168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-30110168IPR001471AP2/ERF domain
PROSITE profilePS5103223.261110167IPR001471AP2/ERF domain
SMARTSM003803.9E-36110173IPR001471AP2/ERF domain
PRINTSPR003672.8E-10111122IPR001471AP2/ERF domain
PfamPF008474.4E-13111160IPR001471AP2/ERF domain
PRINTSPR003672.8E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQEIYHPFGF NNGVDIGSSL SQIILSGGSN TLDSVFSHCA SLPTAIATNS VYEPLGSSVY  60
LRQRDLLQKF CHENKGNPSF SGKSVKGLLQ NYPNPPSTTN YLSPPQKKKL YRGVRQRQWG  120
KWVAEIRLPQ NRVRVWLGTY DTAETAAYAY DRAAYKLRGE YARLNFPNTK DPSELGFADC  180
AKLNALKNTV DAKIQAICQK VKRGKARKKA KRSPEAEKQA KVPEPCSSSS LLSPAVFSEN  240
LSNEWPSPSV SEDGFWRCGN SPSSVLNDYP SMITEEPMFE DCSLARMPSF DADLLWEILA  300
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20107167263ATERF1
3gcc_A2e-20107167263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486658.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W25e-66ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0D2S7620.0A0A0D2S762_GOSRA; Uncharacterized protein
STRINGGorai.006G207800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-52ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]