PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G206500.1

Common Name

B456_006G206500, LOC105800203

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 971aa MW: 106376 Da PI: 4.9078

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G206500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.4e-28	579	629	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ Gorai.006G206500.1 579 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRRINKV 629 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.359	568	649	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	582	629	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-21	865	957	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-23	874	954	No hit	No description
SMART	SM00666	5.5E-22	874	956	IPR000270	PB1 domain
PROSITE profile	PS51745	21.79	874	956	IPR000270	PB1 domain
Pfam	PF00564	1.8E-16	875	955	IPR000270	PB1 domain
CDD	cd06407	5.06E-33	875	954	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MCEPEEDKAC PFPPKQQPQG IMDSVDDDDD GVDLQNSWPL DQLTFLSNPP SPFIISSSEQ 60 PFSPLWTFSD EDSKLGSAAG YNLFLTCTSN SVNENPKEDD NKRGLSSPFL GPVPLENPDS 120 YCAMKERMTQ ALRYFKESTQ QHVLAQVWAP IKSGGRYVLT TSGQPFVLDP NSNGLHQYRM 180 VSLMYMFSVD GESDKQLGLP GRVFLQKLPE WTPNVQYYSS KEYSRLGHAL HYNVQGTLAL 240 PVFEPSMQSC VGVLELIMTS QKINYAPEVD KVCRALQAVN LKSSEILDHP ITQICNKSRQ 300 NALAEILEIL TVVCENHKLP LAQTWVPCQH RSVLANGGGL KRSCTSFDGS CMGQVCMSTT 360 DLASYVVDAH TWGFREACLE HHLQKGQGVA GRAFLCHNSC FCADITQFCK TEYPLVHYAR 420 MFGLTACFAI CLRSAYTGDD DYVLEFFLPS AIVDSNEQRT LLGSILATMK QHFRSLKVAS 480 GDKLEESEGF IQIIEASSDE RHDSILESFP IPPSVKSPPG INTSPDRELQ LDSSRQYLTM 540 NLDPATTGGS IAASGSDKPI CLPQNKDGKK LERKRGKTEK SISLEVLQQY FAGSLKDAAK 600 SLGVCPTTMK RICRQHGISR WPSRRINKVN RSLSKLKCVI ESVQGTTDST FGLASLASSP 660 LPVTVGSVSW PTSLKGSNQQ NSPNSKPLEP QGEKDDSTQG SNGQALVEDW LLGGRTSSQE 720 LFPQLNGLSP NMDEGEEVLR CQREESADMP TSRGLCQGNP EIESAGTKDP LNSIQCFKAH 780 SPPELAFQSL GGLNVSATFS MPEALLATEC QEPFGGMLVE GAGSSKDLRN LCPSAAEAAV 840 DETPPPYSDL ALKQATTTYT QSTPNLTARQ EKTSVTIKAT YREDIIRFRI SLTSGIVELK 900 EEVTKRLKLD VGTFEIKYLD EDNEWVLIAC DSDLQECLDV SISSGCYMVR LSVQSAMANL 960 GSSCESTGVL *

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MCEPEEDKAC PFPPKQQPQG IMDSVDDDDD GVDLQNSWPL DQLTFLSNPP SPFIISSSEQ  60
PFSPLWTFSD EDSKLGSAAG YNLFLTCTSN SVNENPKEDD NKRGLSSPFL GPVPLENPDS  120
YCAMKERMTQ ALRYFKESTQ QHVLAQVWAP IKSGGRYVLT TSGQPFVLDP NSNGLHQYRM  180
VSLMYMFSVD GESDKQLGLP GRVFLQKLPE WTPNVQYYSS KEYSRLGHAL HYNVQGTLAL  240
PVFEPSMQSC VGVLELIMTS QKINYAPEVD KVCRALQAVN LKSSEILDHP ITQICNKSRQ  300
NALAEILEIL TVVCENHKLP LAQTWVPCQH RSVLANGGGL KRSCTSFDGS CMGQVCMSTT  360
DLASYVVDAH TWGFREACLE HHLQKGQGVA GRAFLCHNSC FCADITQFCK TEYPLVHYAR  420
MFGLTACFAI CLRSAYTGDD DYVLEFFLPS AIVDSNEQRT LLGSILATMK QHFRSLKVAS  480
GDKLEESEGF IQIIEASSDE RHDSILESFP IPPSVKSPPG INTSPDRELQ LDSSRQYLTM  540
NLDPATTGGS IAASGSDKPI CLPQNKDGKK LERKRGKTEK SISLEVLQQY FAGSLKDAAK  600
SLGVCPTTMK RICRQHGISR WPSRRINKVN RSLSKLKCVI ESVQGTTDST FGLASLASSP  660
LPVTVGSVSW PTSLKGSNQQ NSPNSKPLEP QGEKDDSTQG SNGQALVEDW LLGGRTSSQE  720
LFPQLNGLSP NMDEGEEVLR CQREESADMP TSRGLCQGNP EIESAGTKDP LNSIQCFKAH  780
SPPELAFQSL GGLNVSATFS MPEALLATEC QEPFGGMLVE GAGSSKDLRN LCPSAAEAAV  840
DETPPPYSDL ALKQATTTYT QSTPNLTARQ EKTSVTIKAT YREDIIRFRI SLTSGIVELK  900
EEVTKRLKLD VGTFEIKYLD EDNEWVLIAC DSDLQECLDV SISSGCYMVR LSVQSAMANL  960
GSSCESTGVL *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486641.1	0.0	PREDICTED: protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0D2QDY3	0.0	A0A0D2QDY3_GOSRA; Uncharacterized protein
STRING	Gorai.006G206500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Gorai.006G206500.1
Entrez Gene	105800203

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]