PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G206100.3

Common Name

B456_006G206100, LOC105800201

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 232aa MW: 25810.1 Da PI: 8.8783

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G206100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7e-38	15	76	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+s+ntkfCyynnysl qPryfCk+CrryWt+GG+lrn+PvGg +rk k+sss Gorai.006G206100.3 15 KQQALNCPRCNSMNTKFCYYNNYSLRQPRYFCKTCRRYWTEGGSLRNIPVGGCSRKTKRSSS 76 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.0E-32	17	73	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-21	19	66	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.239	19	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MATDLERKAA AKPQKQQALN CPRCNSMNTK FCYYNNYSLR QPRYFCKTCR RYWTEGGSLR 60 NIPVGGCSRK TKRSSSSSSK KLPDLVNNPK IHGGQDLNLA YPVSEVYTTS MSEFVKVPNS 120 SVENSKKEIP SSLFPRCHVS AFELVTGMSS KGSNPFIPMP VPDPNTVYTP GFPLQEYKPT 180 LNFCVDGVEE INGRLLFPFQ DLKQTTDNED NKEQGDSSAG FWNGMLGGSS W*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618042	1e-146	JX618042.1 Gossypium hirsutum clone NBRI_GE63365 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486637.1	1e-173	PREDICTED: dof zinc finger protein DOF1.8-like isoform X3
Swissprot	Q43385	2e-48	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A0D2RZI4	1e-172	A0A0D2RZI4_GOSRA; Uncharacterized protein
STRING	Gorai.006G206100.1	1e-170	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-46	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G206100.3
Entrez Gene	105800201

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]