PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G203800.3
Common NameB456_006G203800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 483aa    MW: 54076.1 Da    PI: 4.5983
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G203800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.7e-5491371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptdeel+++yL+ k++g+++++ e+i+e+d++k+ePwdLp  +++k+++ ew+fF++ d+ky+tg+r nrat++gyWkatgkd
  Gorai.006G203800.3   9 LPLGFRFRPTDEELIHFYLRSKINGNRNDEIEIIREIDVCKCEPWDLPdlSAIKTQDPEWFFFCPLDRKYPTGNRLNRATEAGYWKATGKD 99 
                         699************************999999**************96448888999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++s +++l+g+kktLvfy+grap+g++t+Wvmheyr 
  Gorai.006G203800.3 100 RKIKS-GSTLIGMKKTLVFYNGRAPRGKRTNWVMHEYRT 137
                         *****.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-606160IPR003441NAC domain
PROSITE profilePS5100557.6589160IPR003441NAC domain
PfamPF023651.9E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGVLLLNSLP LGFRFRPTDE ELIHFYLRSK INGNRNDEIE IIREIDVCKC EPWDLPDLSA  60
IKTQDPEWFF FCPLDRKYPT GNRLNRATEA GYWKATGKDR KIKSGSTLIG MKKTLVFYNG  120
RAPRGKRTNW VMHEYRTTLD ELDGTKPGQN AFVICRIFKK QDETIEDINS DEVDPSVLSP  180
TEDMASELEV PQASPTVKQE AEKACDTSET CFASFPDEVI SNAVAPIFEG NSDNHDNYNE  240
IDQVAEISPA EVDLLEEALN HFYDPMMEPL FSPLHNQIEA EQAPWMFDHV GNCYNVEFGH  300
GTNENDPYIS NFLESILKNS DDYHGDDTGS QKNSESETHT TMTIGKDGGF CSKPDSEVAQ  360
VLLGTDTVNG VPPIGTAQDC GIPNSDAELF SNHMNTSCDI DGAITGIRTR SRPSRSQLDS  420
ENPLAQGNAS RRLRLQCKLQ VHSLHCDNAI YNRSDVEIED DSKSVVTKVR RKSSGKGYHC  480
RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-42816116166NO APICAL MERISTEM PROTEIN
1ut4_B2e-42816116166NO APICAL MERISTEM PROTEIN
1ut7_A2e-42816116166NO APICAL MERISTEM PROTEIN
1ut7_B2e-42816116166NO APICAL MERISTEM PROTEIN
4dul_A2e-42816116166NAC domain-containing protein 19
4dul_B2e-42816116166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.37140.0flower|seedling| flowering
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472080.0KC847208.1 Gossypium hirsutum NAC domain protein NAC31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313704.10.0NAC domain-containing protein 62-like
RefseqXP_012486606.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A0D2S6U60.0A0A0D2S6U6_GOSRA; Uncharacterized protein
STRINGGorai.006G203800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.13e-91NAC domain containing protein 62
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]