PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G200400.1
Common NameB456_006G200400, LOC105800143
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 341aa    MW: 38270.4 Da    PI: 4.656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G200400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19111160255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Gorai.006G200400.1 111 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 160
                         89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-30110167IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21111167IPR016177DNA-binding domain
CDDcd000182.57E-33111167No hitNo description
PfamPF008478.8E-13111160IPR001471AP2/ERF domain
PROSITE profilePS5103223.657111168IPR001471AP2/ERF domain
SMARTSM003803.9E-38111174IPR001471AP2/ERF domain
PRINTSPR003673.7E-10112123IPR001471AP2/ERF domain
PRINTSPR003673.7E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDQHFLCPIT YTQHKTVTKM FRKPPSKPTK IVRVSVTDPD ATDSSSDEED YFFVPRRRVK  60
RYVNEISIEP APCKSTASTT VPNNNSNRKR TATDVADSNR RPLKLSSSGR KFRGVRQRPW  120
GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG PDALTNFITP PAKESIGKPD  180
NINVPSVSGY QSGDDSPRNL SSPTSVFNFE TQSTEDTAVE PERSVHELQE GESKPPPAQP  240
EPSNDWGDYL PLDFPFLDDF FNNQVPVLSL FDETSTIFSD SKVINQHFDD ILINTSRDFE  300
CYLPSSLSSS ASICQVDDQV NDYFEEIGDL FLLDPLVSNV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22107167162ATERF1
3gcc_A5e-22107167162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486535.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A0D2RZF80.0A0A0D2RZF8_GOSRA; Uncharacterized protein
STRINGGorai.006G200400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-64cytokinin response factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]