PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G198300.1
Common NameB456_006G198300, LOC105800122
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 611aa    MW: 66956.6 Da    PI: 6.5195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G198300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.52.5e-1102426102374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++++e+A a+++g++  a+++L+rl + ++ +g++ qR +a+++ AL++r+++    + +  p+ e     s+e++aa++l++++sP++k
  Gorai.006G198300.1 242 KQTIMEAASAIAEGKTDVANEILTRLAQDSNAKGNSEQRFVACMLLALKSRINS----VENPPPVAEL---FSKEHAAATQLLYDLSPCFK 325
                         5789*************************************************9....4443343333...49****************** PP

                GRAS  93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         +++l+aN aIl+a+  +   +++HiiDfdi++G Q+++Ll+aL++R +g+p  ++iT++++  +g  e+++ ++++L+++Ae++gv ++fn
  Gorai.006G198300.1 326 LGFLAANLAILDATRDQpscNKLHIIDFDIGKGRQYINLLHALSERGSGKPaLVKITAIAD--NGGDERVKMVEDKLSEIAERFGVCMKFN 414
                         ***************9988899*************************7766589*******..779************************* PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         v+++ +l dl+ e+L ++p+E la+n++++l+r++desvs+e++rde+L+ vk+l P vv++ve+e+++n+++F  r+ ea  yy alfds
  Gorai.006G198300.1 415 VVASPKLIDLSRESLGCEPDEPLAINFAFNLYRMPDESVSVENQRDELLRRVKGLTPSVVTLVEHEMNTNTAPFTSRVGEASAYYGALFDS 505
                         *8888************************************************************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslv 359
                         +e+++pre++er++vE+  l r+i n v+ceg+er+er+e ++kWr+r+++aGF+  plse++a+++++ l+  +  + g++v+ee+g ++
  Gorai.006G198300.1 506 IESSVPREKSERVMVEEG-LCRKIANSVSCEGRERVERCEVFGKWRARMSMAGFELKPLSESVAESMRARLNSGNrvNPGFTVKEENGGVC 595
                         ******************.99************************************************9998777789************ PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         +gW++r+L+++SaWr
  Gorai.006G198300.1 596 FGWMGRTLTVASAWR 610
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.65215588IPR005202Transcription factor GRAS
PfamPF035148.5E-108242610IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MASGHSTGGP DFYAGIEGRS VASNQTTAPY RTRIPGIFMD PASQIVNRAV PNLVGKRTLA  60
DFQKQQLHYN HPVRNDLLYL RSVKPRTTYQ HSSTISPMDF SSNLSPDVMG NFSSPSSCIS  120
QRYYGLPLLQ HPRPQQAMNP GFSSVQQMSP IQMRVVHPQD PEKKMMNRLQ ELEKQLLDDE  180
NDDEGDAVSV ISNTNSEWSE TIQNLISSGS PIQPVAPSST SSTTSSSSST TSVVSPAPTS  240
SKQTIMEAAS AIAEGKTDVA NEILTRLAQD SNAKGNSEQR FVACMLLALK SRINSVENPP  300
PVAELFSKEH AAATQLLYDL SPCFKLGFLA ANLAILDATR DQPSCNKLHI IDFDIGKGRQ  360
YINLLHALSE RGSGKPALVK ITAIADNGGD ERVKMVEDKL SEIAERFGVC MKFNVVASPK  420
LIDLSRESLG CEPDEPLAIN FAFNLYRMPD ESVSVENQRD ELLRRVKGLT PSVVTLVEHE  480
MNTNTAPFTS RVGEASAYYG ALFDSIESSV PREKSERVMV EEGLCRKIAN SVSCEGRERV  540
ERCEVFGKWR ARMSMAGFEL KPLSESVAES MRARLNSGNR VNPGFTVKEE NGGVCFGWMG  600
RTLTVASAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-392436106375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.3561e-131seedling
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486504.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D2QDD00.0A0A0D2QDD0_GOSRA; Uncharacterized protein
STRINGGorai.006G198300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-167SCARECROW-like 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]