PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G197000.1

Common Name

B456_006G197000, LOC105800108

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 338aa MW: 36419.8 Da PI: 7.118

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G197000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.4	1.8e-36	85	184	4	108
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ + + + ++s+ +++ Gorai.006G197000.1 85 PKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV----NGTLKIPTSSGKQEG 171 5899**********************************************************9999955521....111111111122222 PP TCP 94 aakskksqksaasal 108 + ++k+++++++ + Gorai.006G197000.1 172 ELPKKRRRRPSN--S 184 222222222222..2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-30	89	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.559	89	143	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MECNRNQTIE EIDESINNNT AVIINEERHQ SNNTTPTFSA SDATVMDPNQ PMKEEALTDT 60 EPQELANPTL VQVVPAARTQ RSLAPKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL 120 GHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVNGTL KIPTSSGKQE GELPKKRRRR 180 PSNSEFIDVN EHQSSVSSGL APIAPMTCNS FNLNSQGLVP IWPMGTFSVL PAAPGSNQAQ 240 LWAIPATATP FFNVTGRPIS SFVSAMQPEV QDSSVGSMGS SVLPTSSSGA TSVSNGNNSS 300 NHSTTQMLRE FSLEILDKRE LQFLGRPANQ QAPCSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	180	PKKRRRRP
2	174	179	KKRRRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00007	PBM	Transfer from 495258	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578091	2e-78	JX578091.1 Gossypium hirsutum clone NBRI_GE10040 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486484.1	0.0	PREDICTED: transcription factor TCP19-like
Swissprot	Q9LT89	2e-86	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A0D2T135	0.0	A0A0D2T135_GOSRA; Uncharacterized protein
STRING	Gorai.006G197000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-86	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G197000.1
Entrez Gene	105800108

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]