PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G195700.1
Common NameB456_006G195700, LOC105800095
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 239aa    MW: 27516.2 Da    PI: 8.2227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G195700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.3e-152572148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv+  + +G  +W+++++  g++R++k+c++rw +yl
  Gorai.006G195700.1 25 KGPWTAEEDKKLVNFMRTHGYYCWRAVPKLAGLRRCGKSCRLRWTNYL 72
                        79********************************************97 PP

2Myb_DNA-binding51.72e-1683122647
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Gorai.006G195700.1  83 HDEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 122
                         68***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-221673IPR009057Homeodomain-like
PROSITE profilePS5129415.3012072IPR017930Myb domain
SuperFamilySSF466891.99E-2722119IPR009057Homeodomain-like
SMARTSM007175.0E-122474IPR001005SANT/Myb domain
PfamPF002492.2E-142572IPR001005SANT/Myb domain
CDDcd001677.65E-92772No hitNo description
PROSITE profilePS5129426.53873127IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2474128IPR009057Homeodomain-like
SMARTSM007174.7E-1477125IPR001005SANT/Myb domain
PfamPF002491.3E-1483122IPR001005SANT/Myb domain
CDDcd001674.02E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVGVDWCKVR GMGRQPCCDK LGVKKGPWTA EEDKKLVNFM RTHGYYCWRA VPKLAGLRRC  60
GKSCRLRWTN YLRPDLKRGL LNHDEEQLVI DLHARLGNRW SKIAARLPGR TDNEIKNHWN  120
THIKKKLIKM GIDPVTHEPL QKPDTPQNKP NLDPNQPENL SKSCAHEFSL PTGPDKWRSS  180
WESDDDPSIN LIWPEAFLHD LSENFHGTDS WWKEYSEIGT SSKEETCFSW LVGDAGEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27251277108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517830.0EF651783.1 Gossypium hirsutum transcription factor TF1 (TF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486460.11e-178PREDICTED: protein ODORANT1-like
SwissprotQ50EX62e-83ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D2T0Z31e-176A0A0D2T0Z3_GOSRA; Uncharacterized protein
STRINGGorai.006G195700.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.13e-86myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]