PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.006G183000.1 | ||||||||
Common Name | B456_006G183000, LOC105799954 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 286aa MW: 34349.5 Da PI: 7.6654 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.3 | 2.4e-24 | 39 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k lWe +s +mre+gf+rs +qCk+kw+nl +ryk ++++e++ ++++p++++l+ Gorai.006G183000.1 39 QWSIQETKEFLMIRAELDRSFMETKRNKLLWEVISTRMREKGFNRSTEQCKCKWKNLVTRYKGCETMEEEA---MRQQFPFYNELQ 121 7********************************************************************95...56689*****98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 1.17E-21 | 38 | 103 | No hit | No description |
Pfam | PF13837 | 7.0E-20 | 39 | 123 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 40 | 96 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MEGHQHHHHQ YQQQQYQYHQ QQQQPPTSSV NVDPDRFPQW SIQETKEFLM IRAELDRSFM 60 ETKRNKLLWE VISTRMREKG FNRSTEQCKC KWKNLVTRYK GCETMEEEAM RQQFPFYNEL 120 QAIFSARMQS ILWSESEGGV TGSKRKAVQL SSDEEEDTEE KELERSSVRK KKQGKTSGGA 180 GIGGSTSGNG NNSNNIKEIL EDFMRQQMQM EMQWREAFEA REHERRLKEM EWRQKMEALE 240 NERILMDRRW YEREEQRRMR EEARAEKRDA LITALLNKLR RDDHM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 2e-12 | 36 | 119 | 3 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN127768 | 2e-77 | JN127768.1 Theobroma cacao clone TCC_BC011L18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486231.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 1e-73 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A0D2QCA7 | 0.0 | A0A0D2QCA7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G183000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01380.1 | 9e-54 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.006G183000.1 |
Entrez Gene | 105799954 |
Publications ? help Back to Top | |||
---|---|---|---|
|