PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G171700.1

Common Name

B456_006G171700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 301aa MW: 33963.8 Da PI: 6.0591

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G171700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.5	3.3e-29	111	167	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK +k++++prsYY+C ++C++kk+vers+++p++++itYeg H h Gorai.006G171700.1 111 DDGYKWRKYGQKWIKNTPNPRSYYKCRNPRCSAKKQVERSKDEPDTLIITYEGFHLH 167 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-27	108	167	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-25	108	167	IPR003657	WRKY domain
PROSITE profile	PS50811	25.511	109	170	IPR003657	WRKY domain
SMART	SM00774	2.8E-32	110	169	IPR003657	WRKY domain
Pfam	PF03106	3.0E-24	111	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEKEQKDDRF GCEDELVREL LDDESPLFVL QQGTVQAKSK TSGEDSTKRL ICAGPRIEDI 60 ENALSVKTWN GTQYQVQQQN RINSIQQERG LTKIENKYTL KIKNYGNCMA DDGYKWRKYG 120 QKWIKNTPNP RSYYKCRNPR CSAKKQVERS KDEPDTLIIT YEGFHLHFAY PYLPLDNHHQ 180 PSPDDTISPT KKAKQGISEA ESQVPETIAN YTNIEPLPSS IEGCPPEMSL EAGFSQQGLL 240 EDVVPWVIRN PSHNNNISSI SSSSSSSNYS RSPPASPYSL STSPFYDPCL DILSVNSSIR 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-18	109	167	16	74	Probable WRKY transcription factor 4
2lex_A	8e-18	109	167	16	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669838	0.0	KF669838.1 Gossypium hirsutum WRKY transcription factor 38 (WRKY38) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483104.1	0.0	PREDICTED: LOW QUALITY PROTEIN: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
Refseq	XP_016671207.1	0.0	PREDICTED: probable WRKY transcription factor 49
TrEMBL	A0A0D2NU23	0.0	A0A0D2NU23_GOSRA; Uncharacterized protein
STRING	Gorai.006G171700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9405	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	3e-45	WRKY DNA-binding protein 49

Link Out ? help Back to Top
Phytozome	Gorai.006G171700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]