PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G168100.1 | ||||||||
Common Name | B456_006G168100, LOC105799803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 91aa MW: 10084 Da PI: 10.1744 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 136.8 | 5e-43 | 25 | 90 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++eakGlnPGlivllvv glll+flvgny+ly yaqk+lPPrkkkPvskkk+kre+lkqGv++PGe Gorai.006G168100.1 25 ETEAKGLNPGLIVLLVVLGLLLIFLVGNYVLYSYAQKTLPPRKKKPVSKKKMKRERLKQGVSAPGE 90 689**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 2.0E-40 | 26 | 90 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MAEESDFADK VPPSFYEMGN KIIYETEAKG LNPGLIVLLV VLGLLLIFLV GNYVLYSYAQ 60 KTLPPRKKKP VSKKKMKRER LKQGVSAPGE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486006.1 | 2e-58 | PREDICTED: DNA-binding protein S1FA-like | ||||
Refseq | XP_016671257.1 | 2e-58 | PREDICTED: DNA-binding protein S1FA-like | ||||
Swissprot | Q7XLX6 | 4e-17 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A0D2NTY0 | 5e-57 | A0A0D2NTY0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8HZ19 | 5e-57 | A0A1U8HZ19_GOSHI; DNA-binding protein S1FA-like | ||||
TrEMBL | A0A2P5R7J2 | 5e-57 | A0A2P5R7J2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G168100.1 | 8e-58 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM36816 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G168100.1 |
Entrez Gene | 105799803 |
Publications ? help Back to Top | |||
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