PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G165300.1

Common Name

B456_006G165300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 271aa MW: 29631.8 Da PI: 9.285

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G165300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.3	1.6e-35	107	226	7	89
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec.....eaesssssasnsssg. 88 +++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++++a +c + +s+++++ Gorai.006G165300.1 107 TSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTTPAaheISCasgltT-------TSSPTESc 190 689********************************************************77776433233322111.......22111112 PP TCP 89 ...................................k 89 + Gorai.006G165300.1 191 qlhsvgigsgvvagmytmttpppscrldlcqpmglQ 226 233333555555555555555555555555555540 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-30	107	248	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.853	108	162	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MTFMFSHDTF LVFLKKVTGN ATKKTYFARL SFTPCGVASI PRRSSTLSFL YAFLIKNLNL 60 FLSFAMSSEM AFHKFSATSN RTNSNLNSSL AGESTPKTQL RKPIPLTSKD RHTKVNGRGR 120 RVRMPALCAA RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTTPA AHEISCASGL 180 TTTSSPTESC QLHSVGIGSG VVAGMYTMTT PPPSCRLDLC QPMGLQYSTV GRNGYQHMPF 240 TALLLQPTAA AEEEEQQAGK EEEEEKRHQE *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485940.1	1e-151	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	4e-45	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A0D2QBD5	0.0	A0A0D2QBD5_GOSRA; Uncharacterized protein
STRING	Gorai.006G165300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15265	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	1e-46	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G165300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]