PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G163100.5 | ||||||||
Common Name | B456_006G163100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 344aa MW: 37783 Da PI: 6.9697 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.3 | 1.1e-27 | 101 | 183 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Gorai.006G163100.5 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 183 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 9.8E-132 | 1 | 335 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 2.3E-46 | 96 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.3E-35 | 100 | 183 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.0E-25 | 102 | 183 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.14E-21 | 103 | 184 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 3.72E-42 | 188 | 291 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 2.6E-64 | 190 | 339 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.66E-42 | 190 | 303 | No hit | No description |
Pfam | PF08781 | 2.8E-40 | 191 | 319 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MVSGSNHIQN HNHHENGEKN PTLGGASRSW GTTVSGQSVS TSGSVGSPSS RSEQAMATPA 60 SENTFLRLNH LDIHGDDAGS QGAVGSKKKK RGQRAVAGDK SGRGLRQFSM KVCEKVESKG 120 RTTYNEVADE LVAEFADPGN SVASPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ 180 WKGLPRTSLS DIEDLKTERL GLRNRIDKKA AYLHELEEQF VGLQNLIQRN EQLYSSGNAS 240 GGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCERPQTD 300 EMAHNFSADG EGSSMSAMYK QQILAPPRTS TPGRGFTHFK LGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-39 | 94 | 188 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2156 | 0.0 | flower| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48830687 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485914.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_016671332.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-167 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0D2RXG2 | 0.0 | A0A0D2RXG2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G163100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-152 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G163100.5 |
Publications ? help Back to Top | |||
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