PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G163100.1
Common NameB456_006G163100, LOC105799753
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 354aa    MW: 38864.4 Da    PI: 7.2098
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G163100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-27101183271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Gorai.006G163100.1 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 183
                         689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.2E-1341353IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.5E-4696189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.3E-35100183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-25102183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.21E-21103184IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.08E-42188291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-42190303No hitNo description
SMARTSM011382.1E-70190351IPR014889Transcription factor DP, C-terminal
PfamPF087813.0E-40191319IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVSGSNHIQN HNHHENGEKN PTLGGASRSW GTTVSGQSVS TSGSVGSPSS RSEQAMATPA  60
SENTFLRLNH LDIHGDDAGS QGAVGSKKKK RGQRAVAGDK SGRGLRQFSM KVCEKVESKG  120
RTTYNEVADE LVAEFADPGN SVASPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  180
WKGLPRTSLS DIEDLKTERL GLRNRIDKKA AYLHELEEQF VGLQNLIQRN EQLYSSGNAS  240
GGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCERPQTD  300
EMAHNFSADG EGSSMSAMYK QQILAPPRTS TPGRPPTSPP LPGILKARVK HEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3994188193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.21560.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488306870.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485914.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_016671332.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-167DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D2S4F50.0A0A0D2S4F5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HZA10.0A0A1U8HZA1_GOSHI; transcription factor-like protein DPB isoform X1
STRINGGorai.006G163100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-152Transcription factor DP
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]