PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G159000.3 | ||||||||
Common Name | B456_006G159000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 466aa MW: 53013.9 Da PI: 6.4386 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77.9 | 1.6e-24 | 99 | 200 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ ++++ Gorai.006G159000.3 99 KWTDSMVRLLIMAVYYIGDEGGSEGngsdptakkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKV 189 7**************9999998643366788889999999**********************************************55*** PP trihelix 76 sstcpyfdqle 86 +++ +++d+++ Gorai.006G159000.3 190 VENQSLLDSMD 200 ********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-22 | 97 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MLGLEMPLHP QHHQHQQPPR NPQTAPNLHH LQQNPQMVGF PHQETDHSLH QQSVKQGGYP 60 FGSKAKQTSP LSDEDEHGFN PDDASADAKR KGSPWQRMKW TDSMVRLLIM AVYYIGDEGG 120 SEGNGSDPTA KKKAGGLLQK KGKWKSVSRA MMEKGFYVSP QQCEDKFNDL NKRYKRVNDI 180 LGRGTACKVV ENQSLLDSMD LSPKMKEEVK KLLNSKHLFF REMCAYHNSC GHVATAGAHQ 240 SSVVATEISQ TQHQQAQCLH SSENAQIAGR IETEASKLAK VGSEEEDDDE DEDDEDEDDD 300 EDDDDEAVDG HSRGQNGHGK EDDEDNNEKP SHKRPRKGAF SMSPSPLMQQ LSCEVVNVIQ 360 DGSKSAWEKK HWMKMRLVQL EEQQVSYQYQ AFQLEKQRLK WVKFSGKKER EMERAKLENE 420 RRRLENERMV LLVKQKELEL VDVQQQHLSQ QHSCSKRRDP SNISG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016691470.1 | 0.0 | PREDICTED: myb-like protein V | ||||
Refseq | XP_016691471.1 | 0.0 | PREDICTED: myb-like protein V | ||||
TrEMBL | A0A1U8JMG3 | 0.0 | A0A1U8JMG3_GOSHI; myb-like protein V | ||||
STRING | Gorai.006G159000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 7e-72 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G159000.3 |
Publications ? help Back to Top | |||
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