PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G159000.2

Common Name

B456_006G159000, LOC105799716

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 483aa MW: 54496.5 Da PI: 6.3641

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G159000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.8	1.7e-24	116	217	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt+++v++Li a+ +++++ +++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++ ++++ Gorai.006G159000.2 116 KWTDSMVRLLIMAVYYIGDEGGSEGngsdptakkkaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGtACKV 206 7************9999998643366788889999999******************************************55* PP trihelix 76 sstcpyfdqle 86 +++ +++d+++ Gorai.006G159000.2 207 VENQSLLDSMD 217 ********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.2E-22	114	242	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MDSSGVSGGV FSGIGSGMLG LEMPLHPQHH QHQQPPRNPQ TAPNLHHLQQ NPQMVGFPHQ 60 ETDHSLHQQS VKQGGYPFGS KAKQTSPLSD EDEHGFNPDD ASADAKRKGS PWQRMKWTDS 120 MVRLLIMAVY YIGDEGGSEG NGSDPTAKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC 180 EDKFNDLNKR YKRVNDILGR GTACKVVENQ SLLDSMDLSP KMKEEVKKLL NSKHLFFREM 240 CAYHNSCGHV ATAGAHQSSV VATEISQTQH QQAQCLHSSE NAQIAGRIET EASKLAKVGS 300 EEEDDDEDED DEDEDDDEDD DDEAVDGHSR GQNGHGKEDD EDNNEKPSHK RPRKGAFSMS 360 PSPLMQQLSC EVVNVIQDGS KSAWEKKHWM KMRLVQLEEQ QVSYQYQAFQ LEKQRLKWVK 420 FSGKKEREME RAKLENERRR LENERMVLLV KQKELELVDV QQQHLSQQHS CSKRRDPSNI 480 SG*

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MDSSGVSGGV FSGIGSGMLG LEMPLHPQHH QHQQPPRNPQ TAPNLHHLQQ NPQMVGFPHQ  60
ETDHSLHQQS VKQGGYPFGS KAKQTSPLSD EDEHGFNPDD ASADAKRKGS PWQRMKWTDS  120
MVRLLIMAVY YIGDEGGSEG NGSDPTAKKK AGGLLQKKGK WKSVSRAMME KGFYVSPQQC  180
EDKFNDLNKR YKRVNDILGR GTACKVVENQ SLLDSMDLSP KMKEEVKKLL NSKHLFFREM  240
CAYHNSCGHV ATAGAHQSSV VATEISQTQH QQAQCLHSSE NAQIAGRIET EASKLAKVGS  300
EEEDDDEDED DEDEDDDEDD DDEAVDGHSR GQNGHGKEDD EDNNEKPSHK RPRKGAFSMS  360
PSPLMQQLSC EVVNVIQDGS KSAWEKKHWM KMRLVQLEEQ QVSYQYQAFQ LEKQRLKWVK  420
FSGKKEREME RAKLENERRR LENERMVLLV KQKELELVDV QQQHLSQQHS CSKRRDPSNI  480
SG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485858.1	0.0	PREDICTED: myb-like protein V
Refseq	XP_012485859.1	0.0	PREDICTED: myb-like protein V
TrEMBL	A0A0D2S452	0.0	A0A0D2S452_GOSRA; Uncharacterized protein
STRING	Gorai.006G159000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	9e-72	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Gorai.006G159000.2
Entrez Gene	105799716

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]