PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G157300.2

Common Name

B456_006G157300, LOC105799697

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 326aa MW: 35039.2 Da PI: 8.9785

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G157300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.1	7.7e-24	68	111	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epg CrRtDGKkWRCs++v++g+k+CErH+h+gr+rsrk++e Gorai.006G157300.2 68 DPEPGHCRRTDGKKWRCSKDVVPGQKYCERHVHCGRNRSRKPVE 111 79***************************************997 PP
2	QLQ	51.7	2.6e-18	3	39	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLl +i+k Gorai.006G157300.2 3 SYFSLAQWQELELQALIYRYMLAGAAVPPELLHPIKK 39 79*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.8E-10	3	39	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.134	4	39	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.9E-13	4	37	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.906	68	112	IPR014977	WRC domain
Pfam	PF08879	2.8E-19	69	111	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGSYFSLAQW QELELQALIY RYMLAGAAVP PELLHPIKKS LLYSSSYFLH HYQPALLQSG 60 YWGRAAMDPE PGHCRRTDGK KWRCSKDVVP GQKYCERHVH CGRNRSRKPV EMPTSSSTAA 120 AANNSNVSVI ARFGGGGSGC GAVKARSPMT ASTLAAVANG PNNIGFSRPS PPVDLLQLNH 180 SSPESKTKPK GLFEAQNEVD DRSDGHILRH FIDDWPRTPQ DPDNNGTNAS PINSSTCLSI 240 SMPGNSSSDL SLKLSTGIGD SRREHHQQPP LNWAMGGWAV SNQVASMGGP LAEALRSSST 300 SNSSPTSVLH QLPKGSTSEI SYIST*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269\|PubMed:12974814}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485827.1	0.0	PREDICTED: growth-regulating factor 3-like
Refseq	XP_012485828.1	0.0	PREDICTED: growth-regulating factor 3-like
Swissprot	Q8L8A7	5e-75	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A0D2S3Z5	0.0	A0A0D2S3Z5_GOSRA; Uncharacterized protein
STRING	Gorai.006G157300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	3e-57	growth-regulating factor 4

Link Out ? help Back to Top
Phytozome	Gorai.006G157300.2
Entrez Gene	105799697

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]