PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G152400.1

Common Name

B456_006G152400, LOC105799647

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 281aa MW: 31374.7 Da PI: 6.8418

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G152400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	97.1	1.1e-30	40	142	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k ltpsdv+k++rlv+pk++ae++ + + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F +++ Gorai.006G152400.1 40 FEKPLTPSDVGKLNRLVIPKQHAEKYfplaaD-SVDKGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSKYVKEKQLDAGDIILFLRHR 129 99*************************963.3457789**********************************************877 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +++++ +r+ Gorai.006G152400.1 130 SDGDRFFIGCRRR 142 6777778888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-41	36	149	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.19E-31	38	142	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.83E-29	38	141	No hit	No description
PROSITE profile	PS50863	13.93	40	143	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-28	40	142	IPR003340	B3 DNA binding domain
SMART	SM01019	4.3E-25	40	142	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MFFSSNHPSL SFNFNQHEDH SESEINPNQI HPDHGMEPMF EKPLTPSDVG KLNRLVIPKQ 60 HAEKYFPLAA DSVDKGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSK YVKEKQLDAG 120 DIILFLRHRS DGDRFFIGCR RRGAPSAPAD AGNTLMGNST SCGGGGDTRG LYHGHPYLGH 180 IQGYAANLPY RPGCLHAGSI VENEGIAAGN PRRLVRLFGV NLECQLDGSE PSTPENSSSV 240 SVSSQQGPTT HQFYNSQSYT SNYMDITFSR DMNQMRNHQE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-46	37	142	5	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-46	37	142	5	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485771.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Refseq	XP_016716715.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	2e-70	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A0D2S3S0	0.0	A0A0D2S3S0_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LQ85	0.0	A0A1U8LQ85_GOSHI; B3 domain-containing protein At2g36080-like
STRING	Gorai.006G152400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	7e-67	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G152400.1
Entrez Gene	105799647

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]