PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G148800.1

Common Name

B456_006G148800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 278aa MW: 30729.7 Da PI: 4.6498

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G148800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	3.8e-37	10	64	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Gorai.006G148800.1 10 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 64 8***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	5	63	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	9	63	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-31	9	63	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	11	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEAYVEISPN CPRCGSSNTK FCYYNNYSLT QPRYFCKGCR RYWTKGGSLR NVPVGGGCRK 60 NRRGKSLLRL PTDGAPCNKS LSSDGAPCYD NKVNALSDSN TSSSMSDGSH IDLALLFANF 120 LNNQQPENKS SFEVPELPTE FDPSREFPSL SNTNMESSLQ LPEENGVTGC LTHSDFSTEY 180 HLSNNDQIYH PGLDYLDRVQ QCTGDETSNY ALPPLPGDDL SSQEILWPNS HSSITHALHL 240 QATQEPLLGP ETQDPNLLFG NWSPFDLSSD DTFSTRT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483262.1	0.0	PREDICTED: dof zinc finger protein DOF3.5
Refseq	XP_016673395.1	0.0	PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBL	A0A1U8I581	0.0	A0A1U8I581_GOSHI; dof zinc finger protein DOF3.5-like
TrEMBL	A0A2P5QG34	0.0	A0A2P5QG34_GOSBA; Uncharacterized protein
STRING	Gorai.006G148800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9141	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	5e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G148800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]