PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.006G143600.2 | ||||||||
Common Name | B456_006G143600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 23994.9 Da PI: 8.7496 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 81 | 135 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Gorai.006G143600.2 81 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 135 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 81 | 170 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l Gorai.006G143600.2 81 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-AL 170 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 3.5E-6 | 11 | 43 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 64 | 131 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-19 | 70 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.3E-16 | 79 | 141 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-15 | 81 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.79E-15 | 81 | 138 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.2E-26 | 137 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.0E-11 | 137 | 171 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
METGSSDGRG RGLDVNRLAV VALGEEAEEG AALSSPNSAV SSFQVDFGFR NGSSRGKREV 60 EMETERGSSR ASDDDDNGST RKKLRLSKEQ SAFLEESFKE HNTLNPKQKL ALAKQLNLRP 120 RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRRL QKELQELRAL KASQPFYMQL 180 PATTLTMCPS CERVATTSTT ADGKNGLLPL TKTSG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 79 | 85 | TRKKLRL |
2 | 129 | 137 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485645.1 | 1e-154 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Refseq | XP_016671464.1 | 1e-154 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 8e-91 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A0D2Q9Z5 | 1e-155 | A0A0D2Q9Z5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G143600.1 | 1e-154 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 7e-79 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.006G143600.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|