PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G143600.1
Common NameB456_006G143600, LOC105799559
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 307aa    MW: 34031.3 Da    PI: 7.7722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G143600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17172226256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Gorai.006G143600.1 172 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 226
                         778899***********************************************98 PP
2HD-ZIP_I/II128.23.5e-41172261191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Gorai.006G143600.1 172 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-AL 261
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.4E-763134IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.2E-18155222IPR009057Homeodomain-like
SuperFamilySSF466891.5E-18162229IPR009057Homeodomain-like
PROSITE profilePS5007117.216168228IPR001356Homeobox domain
SMARTSM003897.3E-16170232IPR001356Homeobox domain
PfamPF000463.7E-15172226IPR001356Homeobox domain
CDDcd000864.44E-16172229No hitNo description
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
SMARTSM003407.2E-26228271IPR003106Leucine zipper, homeobox-associated
PfamPF021836.7E-11228262IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MELALSLGDP SKSFSFLDKT PKLSSKDLGF CMGLRLQEKV DAFEGEAATG DGDYKRVSSD  60
PPHQLDLLPF SPVPRVQPSS QLRFPWLTDN VMETGSSDGR GRGLDVNRLA VVALGEEAEE  120
GAALSSPNSA VSSFQVDFGF RNGSSRGKRE VEMETERGSS RASDDDDNGS TRKKLRLSKE  180
QSAFLEESFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC  240
CETLTEENRR LQKELQELRA LKASQPFYMQ LPATTLTMCP SCERVATTST TADGKNGLLP  300
LTKTSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176TRKKLRL
2220228RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9084231e-142DQ908423.1 Gossypium hirsutum clone LIB5327-009-A1-N1-C5_P_S_Gh484 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485645.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
RefseqXP_016671464.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-100HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D2NSR60.0A0A0D2NSR6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I6V30.0A0A1U8I6V3_GOSHI; homeobox-leucine zipper protein HAT14-like
STRINGGorai.006G143600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-87homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]