PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G142000.1

Common Name

B456_006G142000, LOC105797936

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 318aa MW: 36565 Da PI: 8.2081

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G142000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.5e-32	147	201	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG ekAtPktil+lm+ +gLt+ hvkSHLQkYR+ Gorai.006G142000.1 147 KTRIRWTQDLHEKFVECVKRLGGCEKATPKTILKLMDTQGLTIFHVKSHLQKYRT 201 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-28	144	202	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.363	144	204	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	146	201	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-23	147	201	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-9	151	200	IPR001005	SANT/Myb domain
Pfam	PF14379	2.8E-19	229	274	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MNTKRTDCQE LARQSLGFNR NCNLQPAMEG VPQQLNHGSS SSNPIMSGFQ TPAYAFNATE 60 RRIQLDTSSF CPQHNIYSSI ESIAQDEPNY DFRNTLQSLV KSQICFDQYQ KSFERSYKFP 120 GSNAKTHFSF PSRVNQDQRA YCNKSNKTRI RWTQDLHEKF VECVKRLGGC EKATPKTILK 180 LMDTQGLTIF HVKSHLQKYR TARYMPEFTQ EGRTSTTDLT QIDVKTGLHL TEALQLQLDV 240 QRRLNEQLEF QRNLQLRIEE QGRRLKMMID EQQQKANESL LKNQGVDIKP YEHDPSFSDL 300 DSSIAETSEN VLTSGPC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483256.1	0.0	PREDICTED: uncharacterized protein LOC105797936
TrEMBL	A0A0D2RW89	0.0	A0A0D2RW89_GOSRA; Uncharacterized protein
STRING	Gorai.006G142000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24434	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G142000.1
Entrez Gene	105797936

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]