PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G139300.1
Common NameB456_006G139300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 443aa    MW: 49477.8 Da    PI: 5.0066
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G139300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.1e-1590141155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++  ++W A+I       k  k ++lg+f+t+eeAa+a++ a+ +l+g
  Gorai.006G139300.1  90 SIYRGVSRNSDFKKWQARIGKG----KDiKGIYLGTFDTEEEAARAYDVAAIRLKG 141
                         57****************9983....247************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.43155IPR001471AP2/ERF domain
SMARTSM003803.1E-6261IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-10457IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-8456IPR001471AP2/ERF domain
PfamPF008475.9E-1090141IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1690150IPR016177DNA-binding domain
CDDcd000188.77E-2190151No hitNo description
PROSITE profilePS5103217.43891149IPR001471AP2/ERF domain
SMARTSM003803.3E-2191155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-1891149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MTCRYTGRYE AFLWDNTDPT QKPKTGGYDD EVSAARAYDL AALKLWGELA PLNFPISNYE  60
SDLVEMKLYT KHEYFRNIRR KSRGFSKGVS IYRGVSRNSD FKKWQARIGK GKDIKGIYLG  120
TFDTEEEAAR AYDVAAIRLK GANAITNFDI NEYDLNDILQ SSKLPIGKGA SKLLQKSSIE  180
DVIRKKRCVS DRNSLVYDEE DDSCTPNSNP DMNRIISSSL LFGFQNPDEF QASPTQIQCF  240
NSFGNYMSTD GNPSFNFNVE YPFNVNSDGN FTISGAAENY FGEMQPSEFS HNLSALEKLH  300
QISTFPFLHP YHQNPVEFPE NLASNSLGNC VGTNREFIGS LQGLLTLQGQ DSLKYLDQPE  360
DVTTQNLPQN PINFQTNRVP VYPWSSSYNA EASSYGIFKE VPSTKENEND STGGNDESGQ  420
GAAMVKKALP GKTGNGVKFF KD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485582.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2S3680.0A0A0D2S368_GOSRA; Uncharacterized protein
STRINGGorai.006G139300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.13e-64AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]