PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G138700.1

Common Name

B456_006G138700, LOC105799514

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 365aa MW: 40865.5 Da PI: 6.4451

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G138700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	285	307	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Gorai.006G138700.1 285 FMCRKCGKTFAVRGDWRTHEKNC 307 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.4E-5	197	224	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.5E-6	201	220	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.58	201	223	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	201	228	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	203	223	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.74E-6	267	305	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.2E-5	281	305	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	35	285	305	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.725	285	305	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MADHPYSSFF SGWYKFNPLQ NHPSPNPPPQ HNPNFFTQNL YNTTTIFMRN DPTNTSSIFH 60 YQTSCSSSPP SPPVRKELPL LSLTPTPTRC EKEEEEHDDG VEDQDQDLYI CNGMSKGKEG 120 GGLVLSSGAA EDEDEDETAT VALHIGLPSP TASELASVLS SSSSFSEMRD KDGDEYPVNT 180 LSKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSEYRKG PESLKGSQPT 240 GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKTFAVRGDW 300 RTHEKNCGKL WYCTCGSDFK HKRSLKDHIK AFGNGHAAYD ITISGLEEDD DPASEVEQDN 360 DSMQ*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MADHPYSSFF SGWYKFNPLQ NHPSPNPPPQ HNPNFFTQNL YNTTTIFMRN DPTNTSSIFH  60
YQTSCSSSPP SPPVRKELPL LSLTPTPTRC EKEEEEHDDG VEDQDQDLYI CNGMSKGKEG  120
GGLVLSSGAA EDEDEDETAT VALHIGLPSP TASELASVLS SSSSFSEMRD KDGDEYPVNT  180
LSKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQMHM WGHGSEYRKG PESLKGSQPT  240
GMLRLPCYCC APGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCRKC GKTFAVRGDW  300
RTHEKNCGKL WYCTCGSDFK HKRSLKDHIK AFGNGHAAYD ITISGLEEDD DPASEVEQDN  360
DSMQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485567.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-128	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D2NSJ1	0.0	A0A0D2NSJ1_GOSRA; Uncharacterized protein
STRING	Gorai.006G138700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-123	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G138700.1
Entrez Gene	105799514

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]