PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G138100.3
Common NameB456_006G138100, LOC105799506
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 696aa    MW: 75175.3 Da    PI: 7.1567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G138100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07276296526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C++Gd C +aHg
  Gorai.006G138100.3 276 PCPDFRK-GACRRGDMCEYAHG 296
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.29E-1855163IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-1856146IPR020683Ankyrin repeat-containing domain
CDDcd002043.43E-1656135No hitNo description
PfamPF127961.0E-1056126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.80257150IPR020683Ankyrin repeat-containing domain
SMARTSM002485.3E-45787IPR002110Ankyrin repeat
PRINTSPR014155.0E-55873IPR002110Ankyrin repeat
PROSITE profilePS5008812.07592127IPR002110Ankyrin repeat
SMARTSM002483.9E-492124IPR002110Ankyrin repeat
PRINTSPR014155.0E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035665306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MNHLTLETED TFASLLELAA NNDVVGFKRS IQRDPSGVDE VGLWYGRPKG SKQMVNNERT  60
PLMVAATYGS IDVIKLILSS SDADINRVCG HDKSTALHCA ASGGASNAID VVKLLLAAGA  120
DANLVDANGH LPIDVIVVPP KLQFAKLTLE QLLATKSSVL EQNLRVSTAV TNSGSNPPSP  180
SRENGSPTSG LGSPQKLKST NAPFSSTSEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCAR RVCFFAHTAE ELRPLYVSTG SAVLSPRSST SGATAMDFAA  360
ALSLLPGSPS SVSVMSPSPF TPPMSPSANG MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS  420
SLNARDIPTE DFNLLPDFDV QQQQLINELS SLSQPSMSSN SLNRSGRLKT LTPSNLDDLF  480
SAENSSLQYS DQALAAAVYS PTHKSAVLNQ FQQQQSMLSP INTNFSPKNI EHPLLQASLS  540
GRMSPRNVEP ISPMSSRVSM LVQREKQQQF RSLSSRELGS GSSATVGSPV NSWWGSSNGK  600
PDWAVDADGS GKLRRSSSFE LGNGDEPDLS WVQSLVKESP TEVKEKTGVP VSGVTLNAST  660
GLGSSMNSRI DPVDTAVLGA WIEQMKLDEL VAQQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485553.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0D2RW430.0A0A0D2RW43_GOSRA; Uncharacterized protein
STRINGGorai.006G138100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]