PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G138100.2 | ||||||||
Common Name | B456_006G138100, LOC105799506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 696aa MW: 75175.3 Da PI: 7.1567 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 276 | 296 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Gorai.006G138100.2 276 PCPDFRK-GACRRGDMCEYAHG 296 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 5.29E-18 | 55 | 163 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.2E-18 | 56 | 146 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.43E-16 | 56 | 135 | No hit | No description |
Pfam | PF12796 | 1.0E-10 | 56 | 126 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.802 | 57 | 150 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 5.3E-4 | 57 | 87 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.0E-5 | 58 | 73 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.075 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.9E-4 | 92 | 124 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.0E-5 | 111 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 271 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 276 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-5 | 276 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 276 | 298 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 304 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 65 | 306 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MNHLTLETED TFASLLELAA NNDVVGFKRS IQRDPSGVDE VGLWYGRPKG SKQMVNNERT 60 PLMVAATYGS IDVIKLILSS SDADINRVCG HDKSTALHCA ASGGASNAID VVKLLLAAGA 120 DANLVDANGH LPIDVIVVPP KLQFAKLTLE QLLATKSSVL EQNLRVSTAV TNSGSNPPSP 180 SRENGSPTSG LGSPQKLKST NAPFSSTSEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC 300 WLHPAQYRTR LCKDGTSCAR RVCFFAHTAE ELRPLYVSTG SAVLSPRSST SGATAMDFAA 360 ALSLLPGSPS SVSVMSPSPF TPPMSPSANG MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS 420 SLNARDIPTE DFNLLPDFDV QQQQLINELS SLSQPSMSSN SLNRSGRLKT LTPSNLDDLF 480 SAENSSLQYS DQALAAAVYS PTHKSAVLNQ FQQQQSMLSP INTNFSPKNI EHPLLQASLS 540 GRMSPRNVEP ISPMSSRVSM LVQREKQQQF RSLSSRELGS GSSATVGSPV NSWWGSSNGK 600 PDWAVDADGS GKLRRSSSFE LGNGDEPDLS WVQSLVKESP TEVKEKTGVP VSGVTLNAST 660 GLGSSMNSRI DPVDTAVLGA WIEQMKLDEL VAQQN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485553.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A0D2RW43 | 0.0 | A0A0D2RW43_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G138100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G138100.2 |
Entrez Gene | 105799506 |
Publications ? help Back to Top | |||
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