PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G138100.1

Common Name

B456_006G138100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 643aa MW: 69301.8 Da PI: 7.4991

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G138100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2.1e-07	223	243	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Gorai.006G138100.1 223 PCPDFRK-GACRRGDMCEYAHG 243 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	8.4E-18	3	93	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.13E-17	3	110	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.94E-16	3	82	No hit	No description
SMART	SM00248	5.3E-4	4	34	IPR002110	Ankyrin repeat
Pfam	PF12796	3.4E-10	4	73	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	18.802	4	97	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	4.3E-5	5	20	IPR002110	Ankyrin repeat
SMART	SM00248	3.9E-4	39	71	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.075	39	74	IPR002110	Ankyrin repeat
PRINTS	PR01415	4.3E-5	58	72	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	218	244	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-4	223	245	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-5	223	243	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	223	245	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	251	281	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	65	253	276	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MVNNERTPLM VAATYGSIDV IKLILSSSDA DINRVCGHDK STALHCAASG GASNAIDVVK 60 LLLAAGADAN LVDANGHLPI DVIVVPPKLQ FAKLTLEQLL ATKSSVLEQN LRVSTAVTNS 120 GSNPPSPSRE NGSPTSGLGS PQKLKSTNAP FSSTSEKKEY PIDPSLPDIK NSIYSTDEFR 180 MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPDFRKG ACRRGDMCEY 240 AHGVFECWLH PAQYRTRLCK DGTSCARRVC FFAHTAEELR PLYVSTGSAV LSPRSSTSGA 300 TAMDFAAALS LLPGSPSSVS VMSPSPFTPP MSPSANGMSH SNVAWPQPNV PALHLPGSNL 360 QSSRLRSSLN ARDIPTEDFN LLPDFDVQQQ QLINELSSLS QPSMSSNSLN RSGRLKTLTP 420 SNLDDLFSAE NSSLQYSDQA LAAAVYSPTH KSAVLNQFQQ QQSMLSPINT NFSPKNIEHP 480 LLQASLSGRM SPRNVEPISP MSSRVSMLVQ REKQQQFRSL SSRELGSGSS ATVGSPVNSW 540 WGSSNGKPDW AVDADGSGKL RRSSSFELGN GDEPDLSWVQ SLVKESPTEV KEKTGVPVSG 600 VTLNASTGLG SSMNSRIDPV DTAVLGAWIE QMKLDELVAQ QN*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MVNNERTPLM VAATYGSIDV IKLILSSSDA DINRVCGHDK STALHCAASG GASNAIDVVK  60
LLLAAGADAN LVDANGHLPI DVIVVPPKLQ FAKLTLEQLL ATKSSVLEQN LRVSTAVTNS  120
GSNPPSPSRE NGSPTSGLGS PQKLKSTNAP FSSTSEKKEY PIDPSLPDIK NSIYSTDEFR  180
MYSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPDFRKG ACRRGDMCEY  240
AHGVFECWLH PAQYRTRLCK DGTSCARRVC FFAHTAEELR PLYVSTGSAV LSPRSSTSGA  300
TAMDFAAALS LLPGSPSSVS VMSPSPFTPP MSPSANGMSH SNVAWPQPNV PALHLPGSNL  360
QSSRLRSSLN ARDIPTEDFN LLPDFDVQQQ QLINELSSLS QPSMSSNSLN RSGRLKTLTP  420
SNLDDLFSAE NSSLQYSDQA LAAAVYSPTH KSAVLNQFQQ QQSMLSPINT NFSPKNIEHP  480
LLQASLSGRM SPRNVEPISP MSSRVSMLVQ REKQQQFRSL SSRELGSGSS ATVGSPVNSW  540
WGSSNGKPDW AVDADGSGKL RRSSSFELGN GDEPDLSWVQ SLVKESPTEV KEKTGVPVSG  600
VTLNASTGLG SSMNSRIDPV DTAVLGAWIE QMKLDELVAQ QN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016671532.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0D2SXK7	0.0	A0A0D2SXK7_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8HZV0	0.0	A0A1U8HZV0_GOSHI; zinc finger CCCH domain-containing protein 30-like
STRING	Gorai.006G138100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Gorai.006G138100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]