PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G123900.2 | ||||||||
Common Name | B456_006G123900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 354aa MW: 36772.5 Da PI: 8.1368 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218.3 | 1.7e-67 | 138 | 293 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklss 93 +++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa ++ a s+ +++ +k++r +++++++s+t++s+ Gorai.006G123900.2 138 SATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMAAAVTTAGAGSSgSTSGAKKPRL-ITSQNTTTSHTSTSN 227 5689*********************************************99999888877777636666777776.588888889999888 PP DUF702 94 aeskkeletss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ +++++tss lP +v+++avf+cvrv++v+dg++e+aYq+ v+igGhvfkG+LydqG+e Gorai.006G123900.2 228 TT-PRSFDTSSnagfketLPGQVRAPAVFKCVRVTAVEDGDDEFAYQAIVKIGGHVFKGFLYDQGVE 293 76.55788877799***************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.2E-63 | 140 | 293 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.4E-27 | 141 | 183 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-28 | 245 | 292 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGMVGLRDFV VVAPASFNHH HHHHHHHHTQ DPIMSNDQIS GPSASTALGV GVGVFPLLTA 60 APCLAPLNVE DPDLFNNNGR TKLSGMQLWQ DQNSSPHNYL KKPSSFPDSN NSSSMNLIQS 120 SGGGGMGDRE SGGSGSSSAT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCP THVKSTWVPA 180 ARRRERQLMA AAVTTAGAGS SGSTSGAKKP RLITSQNTTT SHTSTSNTTP RSFDTSSNAG 240 FKETLPGQVR APAVFKCVRV TAVEDGDDEF AYQAIVKIGG HVFKGFLYDQ GVEGRDGFPN 300 ISELHLGGGP GSGGNGGGGR NGGSSSSPVL DPSEVYAATG GCLLGSSYGN PIN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017609077.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 | ||||
Swissprot | Q94CK9 | 4e-89 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A0D2RUX5 | 0.0 | A0A0D2RUX5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G123900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 9e-69 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G123900.2 |
Publications ? help Back to Top | |||
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