PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G123900.1

Common Name

B456_006G123900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 357aa MW: 37102.8 Da PI: 7.9703

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G123900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.5	2.9e-67	138	296	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklss 93 +++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa ++ a s+ +++ +k++r +++++++s+t++s+ Gorai.006G123900.1 138 SATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMAAAVTTAGAGSSgSTSGAKKPRL-ITSQNTTTSHTSTSN 227 5689*******************************************99999888877777636666777776.588888889999888 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++ ++++tss lP +v+++avf+cvrv++v+dg++e+aYq+ v+igGhvfkG+LydqG+e Gorai.006G123900.1 228 TTP-RSFDTSSsnqdagfketLPGQVRAPAVFKCVRVTAVEDGDDEFAYQAIVKIGGHVFKGFLYDQGVE 296 865.5777777799****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.4E-63	140	296	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.5E-27	141	183	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-28	248	295	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGMVGLRDFV VVAPASFNHH HHHHHHHHTQ DPIMSNDQIS GPSASTALGV GVGVFPLLTA 60 APCLAPLNVE DPDLFNNNGR TKLSGMQLWQ DQNSSPHNYL KKPSSFPDSN NSSSMNLIQS 120 SGGGGMGDRE SGGSGSSSAT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCP THVKSTWVPA 180 ARRRERQLMA AAVTTAGAGS SGSTSGAKKP RLITSQNTTT SHTSTSNTTP RSFDTSSSNQ 240 DAGFKETLPG QVRAPAVFKC VRVTAVEDGD DEFAYQAIVK IGGHVFKGFL YDQGVEGRDG 300 FPNISELHLG GGPGSGGNGG GGRNGGSSSS PVLDPSEVYA ATGGCLLGSS YGNPIN*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGMVGLRDFV VVAPASFNHH HHHHHHHHTQ DPIMSNDQIS GPSASTALGV GVGVFPLLTA  60
APCLAPLNVE DPDLFNNNGR TKLSGMQLWQ DQNSSPHNYL KKPSSFPDSN NSSSMNLIQS  120
SGGGGMGDRE SGGSGSSSAT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCP THVKSTWVPA  180
ARRRERQLMA AAVTTAGAGS SGSTSGAKKP RLITSQNTTT SHTSTSNTTP RSFDTSSSNQ  240
DAGFKETLPG QVRAPAVFKC VRVTAVEDGD DEFAYQAIVK IGGHVFKGFL YDQGVEGRDG  300
FPNISELHLG GGPGSGGNGG GGRNGGSSSS PVLDPSEVYA ATGGCLLGSS YGNPIN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483072.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	8e-92	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0D2Q8N8	0.0	A0A0D2Q8N8_GOSRA; Uncharacterized protein
STRING	Gorai.006G123900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5883	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-71	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Gorai.006G123900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]