PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.006G120900.1 | ||||||||
Common Name | B456_006G120900, LOC105799311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21294.2 Da PI: 5.7612 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.4 | 5.2e-43 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+ Gorai.006G120900.1 41 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPETQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQINELQ 131 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++k++ Gorai.006G120900.1 132 AQLAKAKAQ 140 *****9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.917 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-43 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MFKMEYSEST PTTTTATTSS NSPSSSSPPP PPPPPAVVIS PCAACKILRR RCADKCVLAP 60 YFPPTDPAKF TIAHRVFGAS NIIKFLQELP ETQRADAVSS MVYEASARIR DPVYGCAGAI 120 CQLQKQINEL QAQLAKAKAQ AEVANMQLQQ ANLAAFLCME MAETTSAQPN SHQFVDNPSF 180 MEDNNFGSFW EPLWT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-41 | 40 | 169 | 10 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-41 | 40 | 169 | 10 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX616907 | 1e-124 | JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485250.1 | 1e-143 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0D2NQY4 | 1e-142 | A0A0D2NQY4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G120900.1 | 1e-142 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-61 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.006G120900.1 |
Entrez Gene | 105799311 |
Publications ? help Back to Top | |||
---|---|---|---|
|