PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G117800.2
Common NameB456_006G117800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 167aa    MW: 18782.3 Da    PI: 9.5126
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G117800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY195.72e-60214021170
               YABBY  21 ilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111
                         +++vsvP++slfk+vtvrCGhC++llsvn+ +++q+++ ++  +++   ++   +  +++++ s   +++++++  s     ++ ++e+pr
  Gorai.006G117800.2   2 LFMVSVPYNSLFKIVTVRCGHCANLLSVNMGTSQQIVPIQDA-QKQQIINID--EDPSNKECGS---SSKCNKQF-S---AFDSAQNEAPR 82 
                         589***********************************9996.222222222..2222222222...12222221.2...23567899*** PP

               YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Gorai.006G117800.2  83 MPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 140
                         999.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-613140IPR006780YABBY protein
SuperFamilySSF470951.83E-885133IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.0E-588134IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MLFMVSVPYN SLFKIVTVRC GHCANLLSVN MGTSQQIVPI QDAQKQQIIN IDEDPSNKEC  60
GSSSKCNKQF SAFDSAQNEA PRMPPIRPPE KRQRVPSAYN RFIKEEIQRI KASNPDISHR  120
EAFSTAAKNW AHFPHIHFGL KLEGNKQAKL DQSFADQGAQ KSNNYY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485199.11e-119PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB02e-68YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0D2RUI81e-121A0A0D2RUI8_GOSRA; Uncharacterized protein
STRINGGorai.006G117800.11e-118(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-71YABBY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]