PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G111800.4
Common NameB456_006G111800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 388aa    MW: 43201.6 Da    PI: 7.0136
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G111800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.4e-11149190445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.006G111800.4 149 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 190
                         6889*************************9777777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-8146213IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186148192IPR004827Basic-leucine zipper domain
PfamPF001705.5E-8149191IPR004827Basic-leucine zipper domain
CDDcd147085.36E-23150202No hitNo description
SuperFamilySSF579593.73E-7150192No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-7151194No hitNo description
PROSITE patternPS000360153168IPR004827Basic-leucine zipper domain
PfamPF141442.4E-32231306IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGCQFWFHRH QEGSAFDFGE LEEAIVLQGV KIRNDEAKPP LFTAGRPAAT LEMFPSWPMR  60
FQQTPRGSSK SGEESTDSGS GVNTISSKTE NQVEPESPIS KKTSSLDQQQ QVEMASDISR  120
TGTSQNQSAA AKTPQEKRRG STSEKQLDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR  180
IKLTQLEQDL QRARSQGFFL GGCAGTVGNI SSGAAIFDME YSRWLEDDQR HMSELRTGLN  240
AHLSDSDLRI IVDSYISHYD EIFRLKVAAA KADVFHLITG MWTTPAERCF LWMGGFRPSD  300
LIKMLISQLD PLTEQQVMGI YSLQHSSQQA EEALTQGLEQ LQQSLTDTIA GGPVIDGMQQ  360
MAVALGKLAN LEGFVRQVFK FCHHFTS*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5872281e-117JX587228.1 Gossypium hirsutum clone NBRI_GE21262 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485104.10.0PREDICTED: transcription factor TGA2-like
SwissprotQ93XM61e-174TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0D2Q7Q10.0A0A0D2Q7Q1_GOSRA; Uncharacterized protein
STRINGGorai.006G111800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-176bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]