PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G106300.1
Common NameB456_006G106300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 677aa    MW: 74738 Da    PI: 7.357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G106300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07256276526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G Ck Gd+C +aHg
  Gorai.006G106300.1 256 PCPEFRK-GSCKQGDNCEYAHG 276
                         8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.31E-1557144IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-1658176IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00676090IPR002110Ankyrin repeat
PROSITE profilePS5029716.46760169IPR020683Ankyrin repeat-containing domain
CDDcd002042.17E-1362158No hitNo description
PfamPF127965.0E-765159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001995127IPR002110Ankyrin repeat
PROSITE profilePS5008811.62195130IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.107.5E-5248278IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5251277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319251278IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4283315IPR000571Zinc finger, CCCH-type
SMARTSM003563.9286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.409286310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MKGVSHKVDK VPLKFSFLLE LSASNDLIGF RNAIERERRD IDERSLWYGR RMGSRKMGLE  60
QRTPLLIASL FGSKDVVKYI LKSGRVDVNR ACGSDGATAL HCVVAGGSLN SSEVIKTLLD  120
ASANINALDA NGNRPVDLIA MACNSAFNSR KKILESLLKG SGSDDEIERL PVHLEACDSM  180
PWVLKDETEK KEYPIDVTLP DIKNEMYGTD EFRMYNFKVT PCSRAYSHDW TECPFVHPGE  240
NARRRDPRKH QYSCVPCPEF RKGSCKQGDN CEYAHGIFES WLHPAQYRTR LCKDESNCNR  300
KVCFFAHKPE ELRPVYASTG SAVPSPRSYS ATGPALDMGS MSPHALGSPS ILMPPTSTPP  360
LTPTSTASPM AGVMWPNQSN IVPTLQLHRS RLETARCAQN LDLDMEQLGL ESNCRRQKQQ  420
LIDEIPGLSS PTRWNNPLST TSVFSAFANR TGELNRFGAI KPTNLEDIFG SLNPTILPQL  480
QGTSLDAPAH QLQSPTGVRM RQNNNEQLHA NYPTNLPSPP LKASQSFGSD PSRPTTTAVL  540
SSRPAAFANR SQSFIEHTSI NHHSGFSSST SSASAMPCNF SDWGSPDGKL DWGIQGDNKQ  600
RKSSLVFRSN GSNFGTPVES MSPTSDEPDV SWIQSLVKDT PSKQISLEDE QQQEQCHLNI  660
GGSVEKLYLE HEKMVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.10031e-144seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487520451e-144
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485021.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0D2S0G00.0A0A0D2S0G0_GOSRA; Uncharacterized protein
STRINGGorai.006G106300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]