PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G106300.1 | ||||||||
Common Name | B456_006G106300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 677aa MW: 74738 Da PI: 7.357 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.6e-07 | 256 | 276 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G Ck Gd+C +aHg Gorai.006G106300.1 256 PCPEFRK-GSCKQGDNCEYAHG 276 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 7.31E-15 | 57 | 144 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.8E-16 | 58 | 176 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0067 | 60 | 90 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.467 | 60 | 169 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.17E-13 | 62 | 158 | No hit | No description |
Pfam | PF12796 | 5.0E-7 | 65 | 159 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0019 | 95 | 127 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.621 | 95 | 130 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-5 | 248 | 278 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 251 | 277 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.319 | 251 | 278 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 256 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 283 | 315 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9 | 286 | 309 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.409 | 286 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MKGVSHKVDK VPLKFSFLLE LSASNDLIGF RNAIERERRD IDERSLWYGR RMGSRKMGLE 60 QRTPLLIASL FGSKDVVKYI LKSGRVDVNR ACGSDGATAL HCVVAGGSLN SSEVIKTLLD 120 ASANINALDA NGNRPVDLIA MACNSAFNSR KKILESLLKG SGSDDEIERL PVHLEACDSM 180 PWVLKDETEK KEYPIDVTLP DIKNEMYGTD EFRMYNFKVT PCSRAYSHDW TECPFVHPGE 240 NARRRDPRKH QYSCVPCPEF RKGSCKQGDN CEYAHGIFES WLHPAQYRTR LCKDESNCNR 300 KVCFFAHKPE ELRPVYASTG SAVPSPRSYS ATGPALDMGS MSPHALGSPS ILMPPTSTPP 360 LTPTSTASPM AGVMWPNQSN IVPTLQLHRS RLETARCAQN LDLDMEQLGL ESNCRRQKQQ 420 LIDEIPGLSS PTRWNNPLST TSVFSAFANR TGELNRFGAI KPTNLEDIFG SLNPTILPQL 480 QGTSLDAPAH QLQSPTGVRM RQNNNEQLHA NYPTNLPSPP LKASQSFGSD PSRPTTTAVL 540 SSRPAAFANR SQSFIEHTSI NHHSGFSSST SSASAMPCNF SDWGSPDGKL DWGIQGDNKQ 600 RKSSLVFRSN GSNFGTPVES MSPTSDEPDV SWIQSLVKDT PSKQISLEDE QQQEQCHLNI 660 GGSVEKLYLE HEKMVT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1003 | 1e-144 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48752045 | 1e-144 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012485021.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A0D2S0G0 | 0.0 | A0A0D2S0G0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G106300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G106300.1 |
Publications ? help Back to Top | |||
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