PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G102500.1
Common NameB456_006G102500, LOC105799119
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 284aa    MW: 32241.5 Da    PI: 5.8089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G102500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.8e-141698496
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                        v ++ ++l  + + +p + + ++ +    + t tl++ +g+ W+v l   k++++++++kGW++F ++n + +g f++F ++g   f   vk+
  Gorai.006G102500.1 16 VYLTTHSL--RSMLIPATAV-ACPLT---PATATLRNCNGQCWQVDL--VKCDNKMYFRKGWRRFIDENSVVDGNFLIFNYVGGCVF--DVKI 98
                        55444444..4478999988.88766...568***************..*********************************98888..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576135No hitNo description
CDDcd100176.42E-14299No hitNo description
Gene3DG3DSA:2.40.330.102.5E-169102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-189104IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.1E-1013102IPR003340B3 DNA binding domain
PfamPF023629.5E-121595IPR003340B3 DNA binding domain
PROSITE profilePS5086311.37841102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-9157262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-10157243IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.41161258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVKKMSNFEA KNFYKVYLTT HSLRSMLIPA TAVACPLTPA TATLRNCNGQ CWQVDLVKCD  60
NKMYFRKGWR RFIDENSVVD GNFLIFNYVG GCVFDVKIYE FDACEKSIPY VVSEESESES  120
ESEDDGSDSD DAMNDEGADS MEVEDEEIHP EDYVQHLNPY FVAKTTKSSQ RMNELYIPTG  180
IAKDFGVSLE DGEKITLVGL YNRKSIGKVV KWKDQRTCIK GWRSVLNRNK VNLERDTCIC  240
EFLLENGQQA EMGVQTKSIQ VHVISRRKPS ESGIKASKKQ KQK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484963.10.0PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_012484964.10.0PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_012484965.10.0PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_012484966.10.0PREDICTED: B3 domain-containing protein REM20-like
TrEMBLA0A0D2S0680.0A0A0D2S068_GOSRA; Uncharacterized protein
STRINGGorai.006G102500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.27e-17B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]