PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G101600.2 | ||||||||
Common Name | B456_006G101600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 608aa MW: 69613.3 Da PI: 5.173 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69 | 1.2e-21 | 127 | 210 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + Gorai.006G101600.2 127 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 210 69****************************************99888.....8999*******************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-19 | 127 | 209 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-29 | 332 | 425 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.458 | 489 | 525 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0021 | 500 | 527 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MTGDPAFSTG DHHHALSPSP PPNLLITMEE GSQNSEQLFE DDGNELEMEG NDIDIDSNGL 60 DIEGNCLDIE SNGLQDDCDG MLEIDDNHES NGDDATAVSI ENGISQGKNY PPPVVGMEFE 120 SYDDAYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTIK EANSRRKETR 180 TGCLAMIRLR LVESNRWRVD EVKLEHNHLF DHERAQNCKS HKKMDAVAKR KVEPTVDVEV 240 RTIKLYRTST ADPVGYGNLN SLEGEISETV DRSKRLKLNK GDSQIIYDFF SRIQLTSPNF 300 VYLIDLNDEG CLRNVFWIDS RSRAAYGYFG DVVAVDTTCL SNKYEIPLVA FVGVNHHGQS 360 ILLGCGLLAD DTFESYVWLF RAWLTCMSGR SPQTIITDHC RAMQSAISEV FPRAHHRLHL 420 SHVMQSLFEN LGELQESDVF QMILNRTVYE TVKVDEFEMG WDDMIRRFGL ANHAWLCTLY 480 EERDNIKNFE VMHDKAGTEI RCICSCFNFN GYLCRHCLCV LHYNGVEEIP FQYILSRWRK 540 DFKRLYIPEL GSNNIDISNP VQWFDHLHRR AMQVVEEGMI SQDHYTVAWQ AFKESLNKVR 600 LVADKHV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012484946.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8 | ||||
Swissprot | Q9S793 | 1e-168 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A0D2S039 | 0.0 | A0A0D2S039_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G101600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-160 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G101600.2 |
Publications ? help Back to Top | |||
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