PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G101600.1

Common Name

B456_006G101600, LOC105799110

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 736aa MW: 84707.4 Da PI: 5.1378

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G101600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	127	210	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + Gorai.006G101600.1 127 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 210 69**************************************99888.....8999*****************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-19	127	209	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-29	332	425	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	617	653	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0021	628	655	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MTGDPAFSTG DHHHALSPSP PPNLLITMEE GSQNSEQLFE DDGNELEMEG NDIDIDSNGL 60 DIEGNCLDIE SNGLQDDCDG MLEIDDNHES NGDDATAVSI ENGISQGKNY PPPVVGMEFE 120 SYDDAYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTIK EANSRRKETR 180 TGCLAMIRLR LVESNRWRVD EVKLEHNHLF DHERAQNCKS HKKMDAVAKR KVEPTVDVEV 240 RTIKLYRTST ADPVGYGNLN SLEGEISETV DRSKRLKLNK GDSQIIYDFF SRIQLTSPNF 300 VYLIDLNDEG CLRNVFWIDS RSRAAYGYFG DVVAVDTTCL SNKYEIPLVA FVGVNHHGQS 360 ILLGCGLLAD DTFESYVWLF RAWLTCMSGR SPQTIITDHC RAMQSAISEV FPRAHHRLHL 420 SHVMQSLFEN LGELQESDVF QMILNRTVYE TVKVDEFEMG WDDMIRRFGL ANHAWLCTLY 480 EERERWAPVY QKDTFFAGMC TFENGEFRSS FFDGFVHKQT SLKEFFGKYE LLVQEERKTE 540 AINDLESRDS SPLLKTRCFY ELQLSKLYTN EIFRRFQDEV VMMPCFSITQ VHASGPVITY 600 MIKEQEAEGD RSNIKNFEVM HDKAGTEIRC ICSCFNFNGY LCRHCLCVLH YNGVEEIPFQ 660 YILSRWRKDF KRLYIPELGS NNIDISNPVQ WFDHLHRRAM QVVEEGMISQ DHYTVAWQAF 720 KESLNKVRLV ADKHV*

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MTGDPAFSTG DHHHALSPSP PPNLLITMEE GSQNSEQLFE DDGNELEMEG NDIDIDSNGL  60
DIEGNCLDIE SNGLQDDCDG MLEIDDNHES NGDDATAVSI ENGISQGKNY PPPVVGMEFE  120
SYDDAYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC CNCEGFKTIK EANSRRKETR  180
TGCLAMIRLR LVESNRWRVD EVKLEHNHLF DHERAQNCKS HKKMDAVAKR KVEPTVDVEV  240
RTIKLYRTST ADPVGYGNLN SLEGEISETV DRSKRLKLNK GDSQIIYDFF SRIQLTSPNF  300
VYLIDLNDEG CLRNVFWIDS RSRAAYGYFG DVVAVDTTCL SNKYEIPLVA FVGVNHHGQS  360
ILLGCGLLAD DTFESYVWLF RAWLTCMSGR SPQTIITDHC RAMQSAISEV FPRAHHRLHL  420
SHVMQSLFEN LGELQESDVF QMILNRTVYE TVKVDEFEMG WDDMIRRFGL ANHAWLCTLY  480
EERERWAPVY QKDTFFAGMC TFENGEFRSS FFDGFVHKQT SLKEFFGKYE LLVQEERKTE  540
AINDLESRDS SPLLKTRCFY ELQLSKLYTN EIFRRFQDEV VMMPCFSITQ VHASGPVITY  600
MIKEQEAEGD RSNIKNFEVM HDKAGTEIRC ICSCFNFNGY LCRHCLCVLH YNGVEEIPFQ  660
YILSRWRKDF KRLYIPELGS NNIDISNPVQ WFDHLHRRAM QVVEEGMISQ DHYTVAWQAF  720
KESLNKVRLV ADKHV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484946.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A0D2SUZ0	0.0	A0A0D2SUZ0_GOSRA; Uncharacterized protein
STRING	Gorai.006G101600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Gorai.006G101600.1
Entrez Gene	105799110

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]