PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G098600.1

Common Name

B456_006G098600, LOC105799082

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 358aa MW: 41689 Da PI: 4.9332

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G098600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	148	234	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 Wt+ e+ +L++a ++ + +r++l++ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + ts+s s+++yf++++ Gorai.006G098600.1 148 WTEGETFVLLDAWGDRFLQRKRKSLRAEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMVAETgTSTSNSKWVYFKKMD 234 ***********************************762678*******************9888779***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-4	110	118	IPR009057	Homeodomain-like
Pfam	PF13837	1.2E-22	147	236	No hit	No description
PROSITE profile	PS50090	6.121	148	205	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-4	173	212	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDEIEDVRYH SNPYGDNQQQ GYRSSSSGKL PVRDVSCSRL NGNRYVDGNE DEEEDDEDLS 60 EEDENHCKIN GDQYVRNYDD GYDNKLYDDD EGSNQKNDDV DSRRHPKKRK LKDLVSSYEF 120 VRRVAAPEVA STSVPKPSCG GRNPLTDWTE GETFVLLDAW GDRFLQRKRK SLRAEEWQEV 180 AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMVAETGT STSNSKWVYF KKMDMLMSSS 240 PQQGVIHKAI SDEMRDSPTI SESTDSEENV SEGLPPKKRR LERQRDDDSW FKLLADSIRK 300 FSNVYEKIEN SKRVQMLELE NMRMEFHREL EMQKRQILKK LQAEIVKMQE EDNASSE*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDEIEDVRYH SNPYGDNQQQ GYRSSSSGKL PVRDVSCSRL NGNRYVDGNE DEEEDDEDLS  60
EEDENHCKIN GDQYVRNYDD GYDNKLYDDD EGSNQKNDDV DSRRHPKKRK LKDLVSSYEF  120
VRRVAAPEVA STSVPKPSCG GRNPLTDWTE GETFVLLDAW GDRFLQRKRK SLRAEEWQEV  180
AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMVAETGT STSNSKWVYF KKMDMLMSSS  240
PQQGVIHKAI SDEMRDSPTI SESTDSEENV SEGLPPKKRR LERQRDDDSW FKLLADSIRK  300
FSNVYEKIEN SKRVQMLELE NMRMEFHREL EMQKRQILKK LQAEIVKMQE EDNASSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	QRKRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484892.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0D2NPJ2	0.0	A0A0D2NPJ2_GOSRA; Uncharacterized protein
STRING	Gorai.006G098600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24952	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-47	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G098600.1
Entrez Gene	105799082

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]