PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G092500.3

Common Name

B456_006G092500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 282aa MW: 29973.7 Da PI: 6.6237

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G092500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00015	18	39	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k+Fs++ L H+r H Gorai.006G092500.3 18 TCFYCNKVFSSHRALGGHLRIH 39 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.91	17	44	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.4E-5	18	43	No hit	No description
PROSITE pattern	PS00028	0	19	39	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MNFLLPRDDS EEHAGTKTCF YCNKVFSSHR ALGGHLRIHQ DGRILRALNY PGGSSSSVNN 60 TGNPPASLPN SQLNSFASFN SLSAITSNSV NNSGNPPASL PNSQPNSSSS FNSPTQFSTS 120 SVNNSGNSPA SLPNNQLNST AFNSLTLLPA AHLACDFSWM IYLNETNQIS QVTLSPSFGN 180 ALPNIQAQNA GPPSAGSANV GRSERRSSGK RSREADRSRN AETSNASRRP RIAPNEHVEP 240 ENCPKKELQL FVDVVVPSSS SEASSSAEEE DLVDMDLSLH L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484788.1	0.0	PREDICTED: uncharacterized protein LOC105799018
Refseq	XP_012484789.1	0.0	PREDICTED: uncharacterized protein LOC105799018
Refseq	XP_012484790.1	0.0	PREDICTED: uncharacterized protein LOC105799018
TrEMBL	A0A0D2RZN3	0.0	A0A0D2RZN3_GOSRA; Uncharacterized protein
STRING	Gorai.006G092500.1	1e-102	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.006G092500.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]