PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G087600.1
Common NameB456_006G087600, LOC105798977
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 552aa    MW: 63264.6 Da    PI: 7.2301
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G087600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.2e-18326422296
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +k+l++sdv+++gr+vlpk+ ae +   ++ +e+++++++d  s+  W++k+++  ++ks++yvl+ ++ +Fvk+ngL +gD+++++  ++
  Gorai.006G087600.1 326 KKELKNSDVGSLGRIVLPKRDAEVNlpPLSDKEGIQVMIKDvYSNHMWTLKYKFwsNNKSRMYVLE-NTGDFVKQNGLGTGDSLTLY--ED 413
                         6899******************999**555568899*****77889******99888888889999.********************..56 PP

                         SEE..EEEE CS
                  B3  88 sefelvvkv 96 
                         ++++l++++
  Gorai.006G087600.1 414 ESKNLYFSI 422
                         888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-23322424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20325422IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-21325426IPR003340B3 DNA binding domain
CDDcd100171.07E-20325424No hitNo description
PROSITE profilePS5086310.221325426IPR003340B3 DNA binding domain
PfamPF023623.7E-15327423IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MHGVLCRISP RLGPHLNQRW RQHYLKHTHW SDGYPETTFL RPLVSQPTTP LAISRYLTLV  60
VSLLSLYLQF HGLFLSPQPI PLHHLTRFSR FFHTWTHPNG SILQPHDLIE PHFVLTQNRK  120
EEHTQSSALS STFFSDRNQH CNPLDSSSSH CTFVLMENSY IPFFSTTATS STTPITTTTT  180
IHSSSNMDWS QNSDFSMFEP MNSQFQHPSQ LLSPNQSLQF PYNRSIEQAP VYPFFTGQKG  240
FEFGVRKEQE RRTNDPYRTK LARINRKLAR QRSLQRNANS GASTQVDARR LINSGADTDT  300
NKNKDNKKDQ YRFCTPDNQR LRVVLKKELK NSDVGSLGRI VLPKRDAEVN LPPLSDKEGI  360
QVMIKDVYSN HMWTLKYKFW SNNKSRMYVL ENTGDFVKQN GLGTGDSLTL YEDESKNLYF  420
SITKVATVAV ESSSNQQYYH NVNNNGEEGN DNSNNIGNMY LPFTSQSKDD EATSLELFME  480
QQEPNDLIMT LPMDSTYGSH TMFPEETRHL PNNVGQTPSL SRSVDDISIN FDDCYGGLDM  540
LPEVNQYNFS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-503154223110B3 domain-containing transcription factor LEC2
6j9c_D4e-503154223110B3 domain-containing transcription factor LEC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841650.0JX584165.1 Gossypium hirsutum clone NBRI_GE17392 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484717.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484718.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484719.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484720.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484721.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
RefseqXP_012484722.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
TrEMBLA0A0D2RSI00.0A0A0D2RSI0_GOSRA; Uncharacterized protein
STRINGGorai.006G087600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.13e-54B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]