PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G066700.3
Common NameB456_006G066700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 361aa    MW: 37962.7 Da    PI: 7.5429
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G066700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP43.67.8e-1490130141
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEE CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqr 41 
                         +CqvegC++dls+ak y++rhkvC +hsk+++v+v+g+++r
  Gorai.006G066700.3  90 RCQVEGCKVDLSDAKAYYSRHKVCCMHSKSSKVIVAGHNER 130
                         6************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-1587130IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.55488165IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.98E-1689138IPR004333Transcription factor, SBP-box
PfamPF031101.3E-991130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEMGSSSLTE SGGSSTNSSA ESLNGLKFGK KIYFEDTAAV AATAGGDGKS AGDGANIGTP  60
SKSGPGSSSL SGSGRKARVD GMAQGVLPPR CQVEGCKVDL SDAKAYYSRH KVCCMHSKSS  120
KVIVAGHNER RRKPPPGSLF SSPYGWLSSS IIENGSRGGS FIVDFSAYPR LPGRDAWPAA  180
RSLECITGNR NTATGSSFSH PWQNNSNKPP HDHFLQGSPC GTSFSSTGIS PGECFTGSGD  240
SSCALSLLSN QPWGSRNQAL NFSVNGVIST EGSSAAQPTA PHGAVVNPYS NASLDFNGSE  300
TVRSSHKMLP HLDLGQIPDP VNCQFSSDLE LSQQSWRSYM EHEQSRAAYD DSMQHIHWTL  360
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223126e-51KJ622312.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484406.10.0PREDICTED: squamosa promoter-binding-like protein 9 isoform X1
TrEMBLA0A0D2SSZ70.0A0A0D2SSZ7_GOSRA; Uncharacterized protein
STRINGGorai.006G066700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-39squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]