PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G066700.2
Common NameB456_006G066700, LOC105798741
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 384aa    MW: 40872.1 Da    PI: 8.3064
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G066700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.82.7e-4290165176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC++dls+ak y++rhkvC +hsk+++v+v+gleqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+
  Gorai.006G066700.2  90 RCQVEGCKVDLSDAKAYYSRHKVCCMHSKSSKVIVAGLEQRFCQQCSRFHQLSEFDKGKRSCRRRLAGHNERRRKP 165
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3387152IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.19788165IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.76E-4089169IPR004333Transcription factor, SBP-box
PfamPF031102.4E-3191164IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEMGSSSLTE SGGSSTNSSA ESLNGLKFGK KIYFEDTAAV AATAGGDGKS AGDGANIGTP  60
SKSGPGSSSL SGSGRKARVD GMAQGVLPPR CQVEGCKVDL SDAKAYYSRH KVCCMHSKSS  120
KVIVAGLEQR FCQQCSRFHQ LSEFDKGKRS CRRRLAGHNE RRRKPPPGSL FSSPYENGSR  180
GGSFIVDFSA YPRLPGRDAW PAARSLECIT GNRNTATGSS FSHPWQNNSN KPPHDHFLQG  240
SPCGTSFSST GISPGECFTG SGDSSCALSL LSNQPWGSRN QALNFSVNGV ISTEGSSAAQ  300
PTAPHGAVVN PYSNASLDFN GSETVRSSHK MLPHLDLGQI PDPVNCQFSS DLELSQQSWR  360
SYMEHEQSRA AYDDSMQHIH WTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30911641184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223121e-104KJ622312.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484407.10.0PREDICTED: squamosa promoter-binding-like protein 9 isoform X2
TrEMBLA0A0D2RRB30.0A0A0D2RRB3_GOSRA; Uncharacterized protein
STRINGGorai.006G066700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-64squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]